PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C019031P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family E2F/DP
Protein Properties Length: 349aa    MW: 38446.9 Da    PI: 5.4777
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C019031P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.11.2e-2793176271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                 d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  MELO3C019031P3  93 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsvaspdqqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 176
                     689********...*****999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.5E-1323348IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.4E-4688182IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-3492176IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.2E-2594176IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.09E-2095177IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.06E-43181284IPR014889Transcription factor DP, C-terminal
SMARTSM011386.8E-70183346IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.33E-42183295No hitNo description
PfamPF087814.2E-41184291IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGTRTQQPSR EDDDDDLPSG PGATTISGQS VSMSGSVGSP SSRSEQTMAT PASDNTFLRL  60
NNLDIHGDEA GSQGPTANVK KKRGQRAVGG DKSGRGLRQF SMKVCEKVES KGRTTYNEVA  120
DELVAEFADP GNSVASPDQQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK EIQWKGLPRT  180
SVNDIEELKA ERLGLRNRIE KKAAYLQELE EQYVGLQNLI QRNEQLFSSE NAPSGGVSLP  240
FILVQTRPHA TVEIEISEDM QLVHFDFNST PFELHDDNYV LKAMKFCNRP QCDNTAQNFT  300
PDGGEGSSMS GMYQPPHMPI PSLSNTPVRT PTSPPLPGII KARVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-3686181193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818701e-133LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132611e-133LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455659.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-158DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1S3C1D50.0A0A1S3C1D5_CUCME; transcription factor-like protein DPB isoform X1
STRINGXP_008455659.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-149Transcription factor DP