PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C019031P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | E2F/DP | ||||||||
Protein Properties | Length: 249aa MW: 28027.6 Da PI: 5.046 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 77.8 | 1e-24 | 2 | 76 | 14 | 71 |
E2F_TDP 14 lklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 l+++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg MELO3C019031P2 2 LAVCEKVESkGRTTYNEVADELVAEfadpgnsvaspdqqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 76 789***9999********************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 1.2E-110 | 2 | 248 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 1.9E-38 | 3 | 82 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.63E-17 | 3 | 77 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.2E-23 | 4 | 76 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.0E-21 | 4 | 76 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14458 | 9.03E-43 | 81 | 184 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 5.75E-43 | 83 | 196 | No hit | No description |
SMART | SM01138 | 6.8E-70 | 83 | 246 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 1.9E-41 | 84 | 191 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MLAVCEKVES KGRTTYNEVA DELVAEFADP GNSVASPDQQ QQYDEKNIRR RVYDALNVLM 60 AMDIISKDKK EIQWKGLPRT SVNDIEELKA ERLGLRNRIE KKAAYLQELE EQYVGLQNLI 120 QRNEQLFSSE NAPSGGVSLP FILVQTRPHA TVEIEISEDM QLVHFDFNST PFELHDDNYV 180 LKAMKFCNRP QCDNTAQNFT PDGGEGSSMS GMYQPPHMPI PSLSNTPVRT PTSPPLPGII 240 KARVKHEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-30 | 2 | 82 | 17 | 94 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681870 | 1e-133 | LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035. | |||
GenBank | LN713261 | 1e-133 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008455659.1 | 0.0 | PREDICTED: transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-120 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A1S3C1D5 | 0.0 | A0A1S3C1D5_CUCME; transcription factor-like protein DPB isoform X1 | ||||
STRING | XP_008455659.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-122 | Transcription factor DP |