PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C019031P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | E2F/DP | ||||||||
Protein Properties | Length: 263aa MW: 29320.1 Da PI: 6.1501 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.9 | 7.3e-28 | 93 | 176 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg MELO3C019031P1 93 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpgnsvaspdqqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 176 689********...*****999********************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.5E-46 | 88 | 182 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.1E-34 | 92 | 176 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.9E-25 | 94 | 176 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.39E-21 | 95 | 177 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF144074 | 3.92E-5 | 183 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MGTRTQQPSR EDDDDDLPSG PGATTISGQS VSMSGSVGSP SSRSEQTMAT PASDNTFLRL 60 NNLDIHGDEA GSQGPTANVK KKRGQRAVGG DKSGRGLRQF SMKVCEKVES KGRTTYNEVA 120 DELVAEFADP GNSVASPDQQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK EIQWKGLPRT 180 SVNDIEELKA ERLGLRNRIE KKAAYLQELE EQAWIAVIIF LLFVSHDYHG IIILQSWYHL 240 TCLNWLLCKI FFAFVLLLAN YF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 7e-40 | 86 | 181 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681870 | 1e-125 | LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035. | |||
GenBank | LN713261 | 1e-125 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008455659.1 | 1e-152 | PREDICTED: transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 4e-98 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A1S3C1D5 | 1e-151 | A0A1S3C1D5_CUCME; transcription factor-like protein DPB isoform X1 | ||||
STRING | XP_008455659.1 | 1e-152 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-88 | Transcription factor DP |