PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018930P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 350aa    MW: 39052 Da    PI: 5.0994
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018930P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.62.9e-092063542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    +C+ +e+ ++++ C+ +   lC+ C  e+H+       H++vp+
  MELO3C018930P1 20 ICEACERCPAEFICKADAASLCAACDAEIHSAnplarrHQRVPI 63
                    8******99*********************66899999**9997 PP

2CCT70.54.2e-24280323144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  MELO3C018930P1 280 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 323
                     9*****************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.6E-121663IPR000315B-box-type zinc finger
PfamPF006431.5E-71963IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3952063IPR000315B-box-type zinc finger
CDDcd000213.30E-102063No hitNo description
PfamPF062036.6E-18280322IPR010402CCT domain
PROSITE profilePS5101716.648280322IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLKTEDEYRE GGGNGWAAGI CEACERCPAE FICKADAASL CAACDAEIHS ANPLARRHQR  60
VPISSGGAMF RSVEEEDEEE AASWLLMNPG KNNNDNKNNN SNNNGMFLLG GEDEDEEEDD  120
DYLKFVEFNG NNEEDDEFER LKNNNYGGGG DSVVPIDQFE GNKDHHHHLH HHLHHHHEQQ  180
QQNHEILLEQ SYGGLVDASE FFHTSSKPSY SYNGFLTHAI SVSSMEVGVV PESTTTTMSD  240
ISISNVRPPK GTIDLFSGTT AAEVAVGIQM PAAQLSPMDR EARVLRYREK KKTRKFEKTI  300
RYASRKAYAE TRPRIKGRFA KRTDVEVQLD RKYSNPLLPD AGYGIVPSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818700.0LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455579.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A1S3C0T90.0A0A1S3C0T9_CUCME; zinc finger protein CONSTANS-LIKE 2
STRINGXP_008455579.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-40CONSTANS-like 2