PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C018930P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | CO-like | ||||||||
Protein Properties | Length: 350aa MW: 39052 Da PI: 5.0994 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.6 | 2.9e-09 | 20 | 63 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++++ C+ + lC+ C e+H+ H++vp+ MELO3C018930P1 20 ICEACERCPAEFICKADAASLCAACDAEIHSAnplarrHQRVPI 63 8******99*********************66899999**9997 PP | |||||||
2 | CCT | 70.5 | 4.2e-24 | 280 | 323 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ MELO3C018930P1 280 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 323 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.6E-12 | 16 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-7 | 19 | 63 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.395 | 20 | 63 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.30E-10 | 20 | 63 | No hit | No description |
Pfam | PF06203 | 6.6E-18 | 280 | 322 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.648 | 280 | 322 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MLKTEDEYRE GGGNGWAAGI CEACERCPAE FICKADAASL CAACDAEIHS ANPLARRHQR 60 VPISSGGAMF RSVEEEDEEE AASWLLMNPG KNNNDNKNNN SNNNGMFLLG GEDEDEEEDD 120 DYLKFVEFNG NNEEDDEFER LKNNNYGGGG DSVVPIDQFE GNKDHHHHLH HHLHHHHEQQ 180 QQNHEILLEQ SYGGLVDASE FFHTSSKPSY SYNGFLTHAI SVSSMEVGVV PESTTTTMSD 240 ISISNVRPPK GTIDLFSGTT AAEVAVGIQM PAAQLSPMDR EARVLRYREK KKTRKFEKTI 300 RYASRKAYAE TRPRIKGRFA KRTDVEVQLD RKYSNPLLPD AGYGIVPSF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681870 | 0.0 | LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008455579.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A1S3C0T9 | 0.0 | A0A1S3C0T9_CUCME; zinc finger protein CONSTANS-LIKE 2 | ||||
STRING | XP_008455579.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3827 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 2e-40 | CONSTANS-like 2 |