PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C018898P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 217aa MW: 23707.2 Da PI: 5.556

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C018898P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	36	74	2	44
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 r +h+e E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L MELO3C018898P2 36 RSKHSETEQRRRSKINERFQILRELIPQN----DQKRDKASFL 74 899*************************9....8999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.02E-11	32	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.036	34	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-14	34	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-10	36	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.67E-10	36	74	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MVKTSKSIHE HFEDDANESG VKIEGKSGES KASGHRSKHS ETEQRRRSKI NERFQILREL 60 IPQNDQKRDK ASFLLEKNYR AADSYTDHSQ VVKRGPNHES AIVFSQAMLT NAPNVMDADL 120 GPAALLNAVD HTLVSATQGL PMSMHTQPIV FDLVGRSSLS TESLDEPVSG SENVSSKTQA 180 ELLPGRTCTT TGFLNHAVSD QDDLTPESEL ESISGY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681870	0.0	LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455559.1	1e-151	PREDICTED: transcription factor BIM2 isoform X3
TrEMBL	A0A1S3C1W9	1e-149	A0A1S3C1W9_CUCME; transcription factor BIM2 isoform X3
STRING	XP_008455559.1	1e-150	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	1e-19	bHLH family protein