PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018898P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 327aa    MW: 35900.9 Da    PI: 6.0902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018898P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH566.9e-183685255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  MELO3C018898P1 36 RSKHSETEQRRRSKINERFQILRELIPQN----DQKRDKASFLLEVIEYIQFLQ 85
                    899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-193299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.0473484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-2234105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-153685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-163688No hitNo description
SMARTSM003531.2E-124090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVKTSKSIHE HFEDDANESG VKIEGKSGES KASGHRSKHS ETEQRRRSKI NERFQILREL  60
IPQNDQKRDK ASFLLEVIEY IQFLQEKLNM YEGSCRGWSS DPSKLMPWKN YRAADSYTDH  120
SQVVKRGPNH ESAIVFSQAM LTNAPNVMDA DLGPAALLNA VDHTLVSATQ GLPMSMHTQP  180
IVFDLVGRSS LSTESLDEPV SGSENVSSKT QAELLPGRTC TTTGFLNHAV SDQDDLTPES  240
ELESISGAYS HGLLSTLTQA LQASGVDLSQ TNISVKVDVG KRANRAISLS EDDKKQSLNN  300
QLMGQSIHGC FSEESEQTHK KLRTGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818700.0LN681870.1 Cucumis melo genomic scaffold, anchoredscaffold00035.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455559.10.0PREDICTED: transcription factor BIM2 isoform X3
TrEMBLA0A1S3C1W90.0A0A1S3C1W9_CUCME; transcription factor BIM2 isoform X3
STRINGXP_008455559.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-56BES1-interacting Myc-like protein 2