PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C018826P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 231aa MW: 24165.4 Da PI: 8.4957 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 66.6 | 4e-21 | 2 | 47 | 15 | 59 |
-TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 15 vkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ MELO3C018826P1 2 AKGNPCPRAYYRCTMAlGCPVRKQVQRCAEDKTILITTYEGNHNHP 47 59*******************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 3.2E-18 | 1 | 48 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.056 | 1 | 49 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-17 | 2 | 49 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-17 | 2 | 47 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.4E-20 | 2 | 49 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAKGNPCPRA YYRCTMALGC PVRKQVQRCA EDKTILITTY EGNHNHPLPP AAMAMASTTS 60 SAARMLLSGS MSSADGLMNS NFLARTLLPC SSSMATISAS APFPTVTLDL TQTPNPLFQR 120 PAPGHFPIPF AAAAPPQTFP QIFGHALYNQ SKFSGLQMSK DIEAPSPPPP TQNPFTDTLS 180 VAGAAIASDP NFIAALATAM TSLIGGSHHQ KENGNGSSNV DNKTSSNSQQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-14 | 3 | 51 | 29 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 0.0 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016901696.1 | 1e-168 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 3e-75 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1S4E0E3 | 1e-167 | A0A1S4E0E3_CUCME; probable WRKY transcription factor 31 | ||||
STRING | XP_008455449.1 | 1e-167 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 4e-61 | WRKY family protein |