PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018789P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 432aa    MW: 48445.1 Da    PI: 6.3489
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018789P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.62.8e-87464212373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela.alkl..fsevsPilkf 93 
                     ++lL++c  a++s+d +laq++++ l++ as  gdp+qRl++ f++AL +r +r +++ + +  + + s+ +++++l+ ++ l  +++v P+++f
  MELO3C018789P1  46 EKLLVHCGSALESHDVTLAQQVMWVLNNVASLVGDPNQRLTSWFLRALVSRASRVCPSPSPTSMSFNGSSIRVETRLMsVTDLarYVDVIPWHRF 140
                     689***************************************************8877766554444444444444440444488********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.... 181
                     ++ +aN aI++a+e+ ++vHi+Df+is+++QWp+L++aL++Rp+gppslRiT+ +   ++    +  ++++g  L+kfA++ ++pf+fn++    
  MELO3C018789P1 141 GFCAANIAIYKAIERYQKVHILDFSISHCMQWPTLIDALSKRPQGPPSLRITVPSFRPQVpplLNIPTQQIGLCLTKFANSKNIPFQFNLFpynh 235
                     ****************************************************998866668889999***********************99864 PP

            GRAS 182 .vak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        +  ++ ++++ L+++++Eal++n+++ l ++       ++e+d+++++ k+l+P++ vvv+++ d++++s++ r++ +++y++  fd+le+ 
  MELO3C018789P1 236 nNNNiIISLFDPSILNLQHDEALVINCQHWLRYVS------DDEKDDFINATKRLNPRITVVVDEDFDLTDSSLASRITTSFNYFWIPFDALETF 324
                     3222346777*******************999997......344699************************************************ PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                     l+++s +r  +E+  +g++i+n++  eg++r+er e+  k +er+++ G+ + p+ ++aa+++k+ll++ +  g+ ++ e+++lvl+Wk+++ v+
  MELO3C018789P1 325 LSKDSTQRLEYEAD-VGQRIENIIGFEGKQRVERLESCVKVSERMRNGGYLNQPFCDEAADEVKALLAEQA-SGWGMKREEDALVLTWKGHNAVF 417
                     **************.9*****************************************************99.88999999*************** PP

            GRAS 370 vSaW 373
                     v+aW
  MELO3C018789P1 418 VTAW 421
                     **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.77719403IPR005202Transcription factor GRAS
PfamPF035149.6E-8546421IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MRAEVRGKTS SVSVHNNSTI LNRADNSSVY GALKGCLGSL DGGCIEKLLV HCGSALESHD  60
VTLAQQVMWV LNNVASLVGD PNQRLTSWFL RALVSRASRV CPSPSPTSMS FNGSSIRVET  120
RLMSVTDLAR YVDVIPWHRF GFCAANIAIY KAIERYQKVH ILDFSISHCM QWPTLIDALS  180
KRPQGPPSLR ITVPSFRPQV PPLLNIPTQQ IGLCLTKFAN SKNIPFQFNL FPYNHNNNNI  240
IISLFDPSIL NLQHDEALVI NCQHWLRYVS DDEKDDFINA TKRLNPRITV VVDEDFDLTD  300
SSLASRITTS FNYFWIPFDA LETFLSKDST QRLEYEADVG QRIENIIGFE GKQRVERLES  360
CVKVSERMRN GGYLNQPFCD EAADEVKALL AEQASGWGMK REEDALVLTW KGHNAVFVTA  420
WVSSDDEIVV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B9e-534642134418Protein SHORT-ROOT
5b3h_E9e-534642134418Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455391.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A1S3C1I70.0A0A1S3C1I7_CUCME; scarecrow-like protein 32
STRINGXP_008455391.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-113GRAS family protein