PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C018722P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Trihelix | ||||||||
Protein Properties | Length: 275aa MW: 31943.3 Da PI: 10.2685 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.4 | 2.5e-15 | 26 | 115 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt +++ +Li a +++ +l+rg+l+ ++W+e+++++ ++++f r+++qCk++++ l+++yk +k++ ++ e + +p+f+ l+ MELO3C018722P1 26 WTFDHTSTLIHAWGQRHLDLNRGSLRHKHWQEIADAVnsshgHDKKFFRTAIQCKNRIDTLKRKYKIEKARIQESGGEYVCAWPFFSCLD 115 ****************************************999***************************99998889999*****9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.3E-21 | 24 | 116 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MQKPRRNHHC RLPLMPSTVP LREDSWTFDH TSTLIHAWGQ RHLDLNRGSL RHKHWQEIAD 60 AVNSSHGHDK KFFRTAIQCK NRIDTLKRKY KIEKARIQES GGEYVCAWPF FSCLDDLIGN 120 SHKASTSVSV SNSQSSPVTT PRLSLFSKVP VAPRSVIKKR RSTHVYRSFC DSYLRRDVNL 180 NEDEGKDGLE SDNSLSSSSF KDREVGYRKL AEAIRTITDI YERVEAEKQR QVVELEMQRM 240 QFTKDLEYQR MQLLLDIHLK FQKIKRARRA SEAG* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681792 | 0.0 | LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016901747.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL1-like isoform X1 | ||||
Refseq | XP_016901749.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL1-like isoform X3 | ||||
TrEMBL | A0A1S4E0I0 | 0.0 | A0A1S4E0I0_CUCME; trihelix transcription factor ASIL1-like isoform X1 | ||||
TrEMBL | A0A1S4E0K6 | 0.0 | A0A1S4E0K6_CUCME; trihelix transcription factor ASIL1-like isoform X3 | ||||
STRING | XP_008455302.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 4e-58 | sequence-specific DNA binding transcription factors |