PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C018717P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 298aa MW: 31758 Da PI: 5.2261

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C018717P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.1	4.3e-29	75	133	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ ++itY +Hnh+ MELO3C018717P1 75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTKLVITYAFDHNHQ 133 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-30	66	135	IPR003657	WRKY domain
SuperFamily	SSF118290	6.15E-25	70	135	IPR003657	WRKY domain
SMART	SM00774	2.5E-34	74	134	IPR003657	WRKY domain
PROSITE profile	PS50811	31.192	75	135	IPR003657	WRKY domain
Pfam	PF03106	6.6E-25	76	133	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDRRVRTNPF LSEQEDPEPT SDDGLPESPS DANDSKPTAA PPPKKSRRGV QKRVVSVPIA 60 DVEGSRSKGE AYPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRVDPT 120 KLVITYAFDH NHQLPVTKSH HHHHNSSPSS AVVAAASAGT DSPSPGSTTT SSSTSSGDNT 180 NAAPSSPAAK FEEVAAVFAS QPELELGGDS LMIKPCIGDF GWLGEVAYDR ILEGPICGGG 240 DIFDDADVMV LSTRGDDEEE SLFADLGELP EGSVVFGRRR TVQPDGPNRT CGTVLDC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-18	52	135	6	79	Disease resistance protein RRS1
5w3x_D	1e-18	52	135	6	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984033	0.0	GU984033.1 Cucumis sativus WRKY protein (WRKY47) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455292.1	0.0	PREDICTED: probable WRKY transcription factor 69 isoform X1
Refseq	XP_016901678.1	0.0	PREDICTED: probable WRKY transcription factor 69 isoform X1
Swissprot	Q93WV5	6e-68	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A1S3C0Q3	0.0	A0A1S3C0Q3_CUCME; probable WRKY transcription factor 69 isoform X1
STRING	XP_008455292.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	7e-61	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]