PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C018642P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

CAMTA

Protein Properties

Length: 1093aa MW: 121495 Da PI: 5.5526

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C018642P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182.4	5.2e-57	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 ++ k+rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+hekLKvg+++vl+cyYah+een++fqr MELO3C018642P2 20 IEAKHRWLRPAEICEILRNYTKFRIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQR 114 4569***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Lee+l +iv+vhylevk MELO3C018642P2 115 RSYWMLEEHLMHIVFVHYLEVK 136 *****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.36	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.8E-80	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.2E-50	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.2E-8	491	593	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	5.4E-6	507	580	IPR002909	IPT domain
SuperFamily	SSF81296	9.02E-16	508	592	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.34E-15	687	802	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.804	691	773	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.24E-11	691	800	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.3E-13	695	804	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF52540	2.02E-8	914	965	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.014	914	936	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.352	915	944	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.8E-4	916	935	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0092	937	959	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.615	938	962	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.8E-4	940	959	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence Send to blast
MADRGSYGLA PRLDIEQLLI EAKHRWLRPA EICEILRNYT KFRIASEPPD RPSSGSLFLF 60 DRKVLRYFRK DGHKWRKKKD GKTVREAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML 120 EEHLMHIVFV HYLEVKGNRT NVGAVVETDE VSTSSQKSST KSSSYSSSHN QAASENADSP 180 SPTSTLTSFC EDADNEDTYQ ATSRFHSFPT SPKMGNGLLV NKPDAGQSNF YFPHSSSNNV 240 EGWSSVPAVD YVAQVQKDGL GGNSGDTSMM GSQKTLSSAS WEEILHQCTT GYQTVPSHVL 300 TSSIEPLSSG IVIGQENSTP DKILTSNSAI KEDFGNSLTM TSNWQVPFED NTLSFSKEHV 360 DHFPDLYSVC DIDSRLTAQK SHDATFGSGH EMFCAHPGKQ NEEILPNLEL QFKEGESYPA 420 MRLSSDNDMP KEGTISYSLT LKQSLIDGEE SLKKVDSFSR WVSKELGEVD DLHMHPSSGL 480 SWTTVECGDM VDDSSLSPSI SEDQLFSITA FSPKWTVTDL ETEVVVIGRF LGNNNGTNCH 540 WSCMFGEVEV PAEVLADGIL CCHAPPHSVG RVPFYVTCSN RVACSEVREF DYLAGSAQDV 600 DVTDIYTAGA TEELRMHLRF ERLLSLEPSD PSNDLSEGAL EKQNLIRELI TIKEEDDSYG 660 EDPNPQNDQI QHQSKEFLFV KLMKEKLYSW LIHKVIEGGK GPNILDGEGQ GVIHLAAALG 720 YDWAIRPIVA AGVSINFRDI NGWTALHWAA LCGRELTVVT LITLDASPGL MSDPSPEVPL 780 GIVPADLASI NGHKGISGFL AEAALTSYVS SISMAETVDD GVSDVSKTKA VQTVSERKAT 840 PVNDGFGDLS LKDSLTAVCN ATQAAGRIYQ ILRVQSFQRK KLSECGTDEF GSSDNSILSF 900 MKARARKSGL SNNPAHAAAV QIQKKFRGWR MRKEFLLIRQ RIVKIQAHVR GHQVRKQYRK 960 IVWSVGMIDK IILRWRRKGS GLRGFRSDAV AKDPPSLMAP PTKEDDYDFL KEGRRQTEER 1020 FQKALTRVKS MAQYPEGRDQ YRRLLTVVQK CRETKGSAMV VTSTSEEVIE GDDMIDIDTL 1080 LDDDALMSMT FD*

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence Send to blast

MADRGSYGLA PRLDIEQLLI EAKHRWLRPA EICEILRNYT KFRIASEPPD RPSSGSLFLF  60
DRKVLRYFRK DGHKWRKKKD GKTVREAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML  120
EEHLMHIVFV HYLEVKGNRT NVGAVVETDE VSTSSQKSST KSSSYSSSHN QAASENADSP  180
SPTSTLTSFC EDADNEDTYQ ATSRFHSFPT SPKMGNGLLV NKPDAGQSNF YFPHSSSNNV  240
EGWSSVPAVD YVAQVQKDGL GGNSGDTSMM GSQKTLSSAS WEEILHQCTT GYQTVPSHVL  300
TSSIEPLSSG IVIGQENSTP DKILTSNSAI KEDFGNSLTM TSNWQVPFED NTLSFSKEHV  360
DHFPDLYSVC DIDSRLTAQK SHDATFGSGH EMFCAHPGKQ NEEILPNLEL QFKEGESYPA  420
MRLSSDNDMP KEGTISYSLT LKQSLIDGEE SLKKVDSFSR WVSKELGEVD DLHMHPSSGL  480
SWTTVECGDM VDDSSLSPSI SEDQLFSITA FSPKWTVTDL ETEVVVIGRF LGNNNGTNCH  540
WSCMFGEVEV PAEVLADGIL CCHAPPHSVG RVPFYVTCSN RVACSEVREF DYLAGSAQDV  600
DVTDIYTAGA TEELRMHLRF ERLLSLEPSD PSNDLSEGAL EKQNLIRELI TIKEEDDSYG  660
EDPNPQNDQI QHQSKEFLFV KLMKEKLYSW LIHKVIEGGK GPNILDGEGQ GVIHLAAALG  720
YDWAIRPIVA AGVSINFRDI NGWTALHWAA LCGRELTVVT LITLDASPGL MSDPSPEVPL  780
GIVPADLASI NGHKGISGFL AEAALTSYVS SISMAETVDD GVSDVSKTKA VQTVSERKAT  840
PVNDGFGDLS LKDSLTAVCN ATQAAGRIYQ ILRVQSFQRK KLSECGTDEF GSSDNSILSF  900
MKARARKSGL SNNPAHAAAV QIQKKFRGWR MRKEFLLIRQ RIVKIQAHVR GHQVRKQYRK  960
IVWSVGMIDK IILRWRRKGS GLRGFRSDAV AKDPPSLMAP PTKEDDYDFL KEGRRQTEER  1020
FQKALTRVKS MAQYPEGRDQ YRRLLTVVQK CRETKGSAMV VTSTSEEVIE GDDMIDIDTL  1080
LDDDALMSMT FD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	0.0	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455205.1	0.0	PREDICTED: calmodulin-binding transcription activator 2 isoform X2
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A1S3C137	0.0	A0A1S3C137_CUCME; calmodulin-binding transcription activator 2 isoform X2
STRING	XP_008455204.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]