PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C018642P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

CAMTA

Protein Properties

Length: 1092aa MW: 121366 Da PI: 5.6129

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C018642P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182.4	5.2e-57	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 ++ k+rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktvrE+hekLKvg+++vl+cyYah+een++fqr MELO3C018642P1 20 IEAKHRWLRPAEICEILRNYTKFRIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQR 114 4569***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Lee+l +iv+vhylevk MELO3C018642P1 115 RSYWMLEEHLMHIVFVHYLEVK 136 *****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.36	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.8E-80	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.2E-50	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.2E-8	490	592	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	5.3E-6	506	579	IPR002909	IPT domain
SuperFamily	SSF81296	9.02E-16	507	591	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.34E-15	686	801	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.804	690	772	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.23E-11	690	799	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.3E-13	694	803	IPR020683	Ankyrin repeat-containing domain
SMART	SM00015	0.014	913	935	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.02E-8	913	964	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	8.352	914	943	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.8E-4	915	934	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0092	936	958	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.615	937	961	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.8E-4	939	958	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1092 aa Download sequence Send to blast
MADRGSYGLA PRLDIEQLLI EAKHRWLRPA EICEILRNYT KFRIASEPPD RPSSGSLFLF 60 DRKVLRYFRK DGHKWRKKKD GKTVREAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML 120 EEHLMHIVFV HYLEVKGNRT NVGAVVETDE VSTSSQKSST KSSSYSSSHN QAASENADSP 180 SPTSTLTSFC EDADNDTYQA TSRFHSFPTS PKMGNGLLVN KPDAGQSNFY FPHSSSNNVE 240 GWSSVPAVDY VAQVQKDGLG GNSGDTSMMG SQKTLSSASW EEILHQCTTG YQTVPSHVLT 300 SSIEPLSSGI VIGQENSTPD KILTSNSAIK EDFGNSLTMT SNWQVPFEDN TLSFSKEHVD 360 HFPDLYSVCD IDSRLTAQKS HDATFGSGHE MFCAHPGKQN EEILPNLELQ FKEGESYPAM 420 RLSSDNDMPK EGTISYSLTL KQSLIDGEES LKKVDSFSRW VSKELGEVDD LHMHPSSGLS 480 WTTVECGDMV DDSSLSPSIS EDQLFSITAF SPKWTVTDLE TEVVVIGRFL GNNNGTNCHW 540 SCMFGEVEVP AEVLADGILC CHAPPHSVGR VPFYVTCSNR VACSEVREFD YLAGSAQDVD 600 VTDIYTAGAT EELRMHLRFE RLLSLEPSDP SNDLSEGALE KQNLIRELIT IKEEDDSYGE 660 DPNPQNDQIQ HQSKEFLFVK LMKEKLYSWL IHKVIEGGKG PNILDGEGQG VIHLAAALGY 720 DWAIRPIVAA GVSINFRDIN GWTALHWAAL CGRELTVVTL ITLDASPGLM SDPSPEVPLG 780 IVPADLASIN GHKGISGFLA EAALTSYVSS ISMAETVDDG VSDVSKTKAV QTVSERKATP 840 VNDGFGDLSL KDSLTAVCNA TQAAGRIYQI LRVQSFQRKK LSECGTDEFG SSDNSILSFM 900 KARARKSGLS NNPAHAAAVQ IQKKFRGWRM RKEFLLIRQR IVKIQAHVRG HQVRKQYRKI 960 VWSVGMIDKI ILRWRRKGSG LRGFRSDAVA KDPPSLMAPP TKEDDYDFLK EGRRQTEERF 1020 QKALTRVKSM AQYPEGRDQY RRLLTVVQKC RETKGSAMVV TSTSEEVIEG DDMIDIDTLL 1080 DDDALMSMTF D*

Sequence ? help Back to Top

Protein Sequence Length: 1092 aa Download sequence Send to blast

MADRGSYGLA PRLDIEQLLI EAKHRWLRPA EICEILRNYT KFRIASEPPD RPSSGSLFLF  60
DRKVLRYFRK DGHKWRKKKD GKTVREAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML  120
EEHLMHIVFV HYLEVKGNRT NVGAVVETDE VSTSSQKSST KSSSYSSSHN QAASENADSP  180
SPTSTLTSFC EDADNDTYQA TSRFHSFPTS PKMGNGLLVN KPDAGQSNFY FPHSSSNNVE  240
GWSSVPAVDY VAQVQKDGLG GNSGDTSMMG SQKTLSSASW EEILHQCTTG YQTVPSHVLT  300
SSIEPLSSGI VIGQENSTPD KILTSNSAIK EDFGNSLTMT SNWQVPFEDN TLSFSKEHVD  360
HFPDLYSVCD IDSRLTAQKS HDATFGSGHE MFCAHPGKQN EEILPNLELQ FKEGESYPAM  420
RLSSDNDMPK EGTISYSLTL KQSLIDGEES LKKVDSFSRW VSKELGEVDD LHMHPSSGLS  480
WTTVECGDMV DDSSLSPSIS EDQLFSITAF SPKWTVTDLE TEVVVIGRFL GNNNGTNCHW  540
SCMFGEVEVP AEVLADGILC CHAPPHSVGR VPFYVTCSNR VACSEVREFD YLAGSAQDVD  600
VTDIYTAGAT EELRMHLRFE RLLSLEPSDP SNDLSEGALE KQNLIRELIT IKEEDDSYGE  660
DPNPQNDQIQ HQSKEFLFVK LMKEKLYSWL IHKVIEGGKG PNILDGEGQG VIHLAAALGY  720
DWAIRPIVAA GVSINFRDIN GWTALHWAAL CGRELTVVTL ITLDASPGLM SDPSPEVPLG  780
IVPADLASIN GHKGISGFLA EAALTSYVSS ISMAETVDDG VSDVSKTKAV QTVSERKATP  840
VNDGFGDLSL KDSLTAVCNA TQAAGRIYQI LRVQSFQRKK LSECGTDEFG SSDNSILSFM  900
KARARKSGLS NNPAHAAAVQ IQKKFRGWRM RKEFLLIRQR IVKIQAHVRG HQVRKQYRKI  960
VWSVGMIDKI ILRWRRKGSG LRGFRSDAVA KDPPSLMAPP TKEDDYDFLK EGRRQTEERF  1020
QKALTRVKSM AQYPEGRDQY RRLLTVVQKC RETKGSAMVV TSTSEEVIEG DDMIDIDTLL  1080
DDDALMSMTF D*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	0.0	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008455206.1	0.0	PREDICTED: calmodulin-binding transcription activator 2 isoform X3
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A1S3C1L9	0.0	A0A1S3C1L9_CUCME; calmodulin-binding transcription activator 2 isoform X3
STRING	XP_008455204.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]