PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018614P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 265aa    MW: 28402.8 Da    PI: 5.0006
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018614P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16225258132
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                     C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ 
  MELO3C018614P1 225 CTHCGTSSksTPMMRRGPAGPRTLCNACGLKWAN 258
                     ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.74686121IPR010399Tify domain
SMARTSM009795.3E-986121IPR010399Tify domain
PfamPF062009.7E-1190120IPR010399Tify domain
PfamPF062032.0E-16153195IPR010402CCT domain
PROSITE profilePS5101713.354153195IPR010402CCT domain
SMARTSM004012.7E-5219264IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.37E-9222259No hitNo description
Gene3DG3DSA:3.30.50.101.7E-12223259IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.94E-13224259No hitNo description
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
PfamPF003204.3E-14225259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MPDSNFQDAM YGSGVMNDGG RDLGNIQNRV DDEDDDINGG EESIDNPQMR FEDSGGMSGS  60
VSVISRVEDV VPSTYVSGSD YNPLTGNGGA DQLTLSFRGE VYAFDSVSPD KVQAVLLLLG  120
GYEIPSGIPA IGSVPVNQQG ADGFPVRSVQ PQRAASLSRF REKRKERCFE KKIRYSVRKE  180
VALRMQRKKG QFISSKAIGD EVGSSSVLSQ TLDSGQDDGL LETSCTHCGT SSKSTPMMRR  240
GPAGPRTLCN ACGLKWANKV CLLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455162.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_008455163.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL76e-65GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3BZV10.0A0A1S3BZV1_CUCME; GATA transcription factor 24-like isoform X1
STRINGXP_008455162.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-59ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]