PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018451P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 301aa    MW: 33140 Da    PI: 6.5543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018451P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1377120855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  MELO3C018451P1  77 TERERRKKMRNMFSNLHALLPHL----PPKADKSSIVDEAVNYIKTLQ 120
                     6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-1569130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.94169119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1474134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-1374121No hitNo description
SMARTSM003536.1E-777125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1077120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.43E-4227267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSPHHHPSWT LLNYSGSDVD DDDNNDENNN SNNNTNTGYL PPPPAPMQVG KKRELETHEG  60
KSAGATESSD HDIHIWTERE RRKKMRNMFS NLHALLPHLP PKADKSSIVD EAVNYIKTLQ  120
ETFERLHKQK VEKLNNNSNP SMSCSKIVHN PALPTTREAF LADQASSNDD MSSSATLLSH  180
LSTTVTPENV ISILPPPPPP SPPSAFQTWT SSNLVLSVCG RHAHFCVCSA KKPGLFAALC  240
YVLDKHRIDV VSAHVSSDLH QSFFMIQAHV SRGYNELGAA TVAEDTFKEA AGEIIFWLSS  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901715.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLA0A1S4E1520.0A0A1S4E152_CUCME; transcription factor bHLH95-like
STRINGXP_008454949.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-42bHLH family protein