PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017912P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 289aa    MW: 32681 Da    PI: 4.3797
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017912P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.5e-3068125359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d+++++itY+++Hnh+
  MELO3C017912P1  68 DFWSWRKYGQKPIKGSPYPRGYYRCSTTkGCSAKKQVERCKTDGSMFIITYTSSHNHP 125
                     99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-3155127IPR003657WRKY domain
SuperFamilySSF1182903.01E-2662127IPR003657WRKY domain
SMARTSM007741.0E-3566126IPR003657WRKY domain
PROSITE profilePS5081130.56168127IPR003657WRKY domain
PfamPF031062.2E-2568125IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEVSSHHSFK PNPNDEHHLL STQPTPEEEQ PLSKKRKVVQ KTVVTVKIGS KKAAIGIGKM  60
KNEGPPPDFW SWRKYGQKPI KGSPYPRGYY RCSTTKGCSA KKQVERCKTD GSMFIITYTS  120
SHNHPGPNIS TLNLDQNQQE IDQPQPLDQD DDEDDDLVPN QEQDHNNNNN DHEKNSIIVS  180
QCEEEVEVEV EEGEEDDDDE LLLLEDEEKK GMEKIKDECL DQEPIISSSS SSSCCDEVMI  240
IKTKKSEIEN HDNFFDELEE LPIPPPFSST LMRSSYSFDE IRISAAPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-21681281880Disease resistance protein RRS1
5w3x_D2e-21681281880Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454282.10.0PREDICTED: probable WRKY transcription factor 69
TrEMBLA0A1S3BZ100.0A0A1S3BZ10_CUCME; probable WRKY transcription factor 69
STRINGXP_008454282.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-31WRKY DNA-binding protein 35