PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017834P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 271aa    MW: 28875.1 Da    PI: 8.062
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017834P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002285107123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  MELO3C017834P1  85 FSCNYCQRKFYSSQALGGHQNAH 107
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-681112No hitNo description
PROSITE profilePS5015711.42785112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDFPIPEPSP SETSTIISAS ESSPPCPRGD RTTDQINPNS HMGLDLSLSN NDSDHGSNPE  60
LNLIDCFDAN LATEPTDTET EPRVFSCNYC QRKFYSSQAL GGHQNAHKRE RTLAKRTQRV  120
GSGSNFGLAH RYSSLASLPL HGSFNRSLGI QAHSMVHKPS LHVSPIGSSG IYGHSGWSRQ  180
PLDQHPAIGR LMQGNSHVGS LRGISSNTGA ARFEGVKRFS PVAVTEASPS LGGFWWDGGG  240
GGGGGGGGFS HMKMKPKQDE LLKLDLSLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454489.10.0PREDICTED: zinc finger protein 3-like
TrEMBLA0A1S3BZI20.0A0A1S3BZI2_CUCME; zinc finger protein 3-like
STRINGXP_008454489.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-47C2H2 family protein