PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017755P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 492aa    MW: 54316.9 Da    PI: 5.6762
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017755P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.4e-061351537
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     C+ ++++ ++l+C+ ++  lC  C  + H+       H
  MELO3C017755P1 13 PCDFCNDQVAILYCRADSAKLCLFCDKHVHSAnllsrkH 51
                    7***************************99545555556 PP
2zf-B_box24.36.5e-085499342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+++ ++++++ C +++  lC++C    H +      H+++p+
  MELO3C017755P1 54 SQICDNCRSEPVSIRCSTDNLVLCQECDWDAHGScsvsaaHDRTPI 99
                    689*************************999954889999988876 PP
3CCT61.82.2e-21442486145
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                     R +a++RYkeKrktR+++K irYesRKa+A++R+RvKGrFvk++e
  MELO3C017755P1 442 RGNAMQRYKEKRKTRRYDKYIRYESRKARADTRKRVKGRFVKASE 486
                     7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.4E-13956IPR000315B-box-type zinc finger
PROSITE profilePS501199.399956IPR000315B-box-type zinc finger
CDDcd000211.63E-51256No hitNo description
PROSITE profilePS5011910.6235299IPR000315B-box-type zinc finger
CDDcd000213.98E-75699No hitNo description
SMARTSM003360.755799IPR000315B-box-type zinc finger
PfamPF062038.5E-16442484IPR010402CCT domain
PROSITE profilePS5101715.031442484IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MVCSKSTTGE TVPCDFCNDQ VAILYCRADS AKLCLFCDKH VHSANLLSRK HVRSQICDNC  60
RSEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHDRTPIE GFTGCPSALE LVSLWGFDLG  120
DKKLEESEML VQNWVCSQDL VMPIDSWASR ASATAFNDLI VPNDNPFLFA NLNCTDAASM  180
FKKQSPSCGK HKQVIYKQLV ELLKRDFEGG DDDDGDDTRD GDAGGEDVGL QSMVPETTNG  240
DCYWPGDLEG RQIPKEDDGV FVGAAPPPLL QQQTSFTSLL TMPSHVGLKD SERSVDETGV  300
WDSNPNRQST QIWDFHLGRL RGHKDANTFD DAYGTGNMGF TIKNFGEYLK ETSPTSAKLL  360
GETYPINCSS VHDDIPSFNN NVNNTTLSQG AATCESMNMP NNKLKCGSKS LQAIKQPIII  420
KGDSILSTST TKADLELLAQ NRGNAMQRYK EKRKTRRYDK YIRYESRKAR ADTRKRVKGR  480
FVKASEAPVF G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454034.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like
TrEMBLA0A1S3BYW60.0A0A1S3BYW6_CUCME; zinc finger protein CONSTANS-LIKE 15-like
STRINGXP_008454034.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-105B-box type zinc finger protein with CCT domain