PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017719P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 339aa    MW: 38089 Da    PI: 7.8757
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017719P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.2e-11248294147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+ W+  E+ l++ + ++lG+  Wk+Ia ++  ++t kq+ s+ qky
   MELO3C017719P1 248 RNYWSLKEHRLFLAGMQLLGKAEWKKIADHVVITKTHKQVASHAQKY 294
                      678*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.141243299IPR017930Myb domain
SMARTSM007171.2E-4247297IPR001005SANT/Myb domain
SuperFamilySSF466894.13E-13248300IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-14248297IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.7E-7248293IPR009057Homeodomain-like
PfamPF002491.3E-9248294IPR001005SANT/Myb domain
CDDcd001674.26E-5251295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MQENKNNLLF LHSSSTPTSL HNFDQNSAPT LTSTINDHEM SRQLFSSIES GDWTNNEGNH  60
NHKRNLKTTQ CYPSSSTPFI DANDNFETPR YYHPSSSQSV DPNSNYSNMD DAFLFSDSLT  120
CSPSILSTTH NKDSFNDSIG HNGFLSDVVN SSSTKTSSKS LDSMTFNNRH SPYPNPQTSH  180
FYSPSSISTT HNNDQFADST EYTGLLSDIV KMRPRVPTMS SSTTNLSSLP PRPPSSHNSL  240
NIKNNNIRNY WSLKEHRLFL AGMQLLGKAE WKKIADHVVI TKTHKQVASH AQKYFLHLDK  300
LSKHKRKRSS IHDITTVEPE FLAEVEACLP QHLKGLNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454484.10.0PREDICTED: myb-like protein J
TrEMBLA0A1S3BZH70.0A0A1S3BZH7_CUCME; myb-like protein J
STRINGXP_008454484.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1677748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.16e-19MYB family protein