PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017669P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 214aa    MW: 22911.4 Da    PI: 7.8609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017669P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.1e-11147192655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L+el+P+     +k  s +++L +Av++Ik Lq
  MELO3C017669P1 147 SIAERERRTRISGKLKKLQELVPNM----DKQTSYSDMLDLAVQHIKGLQ 192
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.63141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14144205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.52E-10145196No hitNo description
Gene3DG3DSA:4.10.280.102.0E-13146204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8147192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-12147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGGGGSGSGS GGGGGGRLKN QMSFNGQDNS LSQISEISES FVEAANSCSN GLQSNTNSTH  60
SFAPSSAFAM DSSWDTSSNS IVFAAPHAKR SKHHHSDADF FSGLESQFSL PQTTLEMAAV  120
ERLLQIPEDS VPCKIRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MDKQTSYSDM  180
LDLAVQHIKG LQNQIQKLNK EVENCTCGSK ECS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-179LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-179LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901527.11e-157PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH128
SwissprotQ8H1021e-68BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1S4DZV81e-156A0A1S4DZV8_CUCME; LOW QUALITY PROTEIN: transcription factor bHLH128
STRINGXP_008454477.11e-156(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]