PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017501P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 365aa    MW: 40128.2 Da    PI: 6.4442
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017501P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.44.6e-061555438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    r C  ++ +++  +C+ ++ +lC +C  ++H        H+
  MELO3C017501P1 15 RPCHFCKTHPAAVYCRPDSAFLCVSCDAKIHCAnklasrHE 55
                    68****************************95545666666 PP

2zf-B_box29.91.2e-0957102342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ ++   C+ +   lC +C  e+H+       H++vp+
  MELO3C017501P1  57 VWMCEVCEQAPAVVMCKADAAALCVTCDAEIHSAnplasrHERVPV 102
                     689*****************************66999999999986 PP

3CCT68.32e-23291334144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK++rY+sRKa+Ae+RpR+KGrF+k++
  MELO3C017501P1 291 REARVLRYREKRKNRKFEKTVRYASRKAYAETRPRIKGRFAKRT 334
                     9*****************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-91259IPR000315B-box-type zinc finger
CDDcd000211.11E-61559No hitNo description
PROSITE profilePS501199.6271759IPR000315B-box-type zinc finger
PROSITE profilePS5011910.87955102IPR000315B-box-type zinc finger
PfamPF006431.2E-757102IPR000315B-box-type zinc finger
CDDcd000215.41E-858102No hitNo description
SMARTSM003361.0E-1060102IPR000315B-box-type zinc finger
PfamPF062031.4E-17291333IPR010402CCT domain
PROSITE profilePS5101716.708291333IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGLDGATVLN GFPGRPCHFC KTHPAAVYCR PDSAFLCVSC DAKIHCANKL ASRHERVWMC  60
EVCEQAPAVV MCKADAAALC VTCDAEIHSA NPLASRHERV PVEPFFDTAE SVVKSSSVLN  120
FLVPNETNVC LGAHYHEEVE VASWLLSNSS FNSKLVHGPE IKPLGGDHLF FTEMDSFIDF  180
EYPNSVSDDH NDINDSVVPV QTKPHPTPVI NHSHSPENCY DIDFCRSKLN SFGYQPQSLS  240
HSVSSSSLDV GVVPQANSMS EISYPMGQTV DSGLPLSGSG NQATQLCGID REARVLRYRE  300
KRKNRKFEKT VRYASRKAYA ETRPRIKGRF AKRTDMVSEV DEIYGSAASP VFLTDAQYGI  360
VPTF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453645.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-110COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A1S3BW820.0A0A1S3BW82_CUCME; zinc finger protein CONSTANS-LIKE 5
STRINGXP_008453645.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-108CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]