PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C017501P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | CO-like | ||||||||
Protein Properties | Length: 365aa MW: 40128.2 Da PI: 6.4442 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.4 | 4.6e-06 | 15 | 55 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r C ++ +++ +C+ ++ +lC +C ++H H+ MELO3C017501P1 15 RPCHFCKTHPAAVYCRPDSAFLCVSCDAKIHCAnklasrHE 55 68****************************95545666666 PP | |||||||
2 | zf-B_box | 29.9 | 1.2e-09 | 57 | 102 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C e+H+ H++vp+ MELO3C017501P1 57 VWMCEVCEQAPAVVMCKADAAALCVTCDAEIHSAnplasrHERVPV 102 689*****************************66999999999986 PP | |||||||
3 | CCT | 68.3 | 2e-23 | 291 | 334 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK++rY+sRKa+Ae+RpR+KGrF+k++ MELO3C017501P1 291 REARVLRYREKRKNRKFEKTVRYASRKAYAETRPRIKGRFAKRT 334 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.0E-9 | 12 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.11E-6 | 15 | 59 | No hit | No description |
PROSITE profile | PS50119 | 9.627 | 17 | 59 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.879 | 55 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-7 | 57 | 102 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.41E-8 | 58 | 102 | No hit | No description |
SMART | SM00336 | 1.0E-10 | 60 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.4E-17 | 291 | 333 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.708 | 291 | 333 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MGLDGATVLN GFPGRPCHFC KTHPAAVYCR PDSAFLCVSC DAKIHCANKL ASRHERVWMC 60 EVCEQAPAVV MCKADAAALC VTCDAEIHSA NPLASRHERV PVEPFFDTAE SVVKSSSVLN 120 FLVPNETNVC LGAHYHEEVE VASWLLSNSS FNSKLVHGPE IKPLGGDHLF FTEMDSFIDF 180 EYPNSVSDDH NDINDSVVPV QTKPHPTPVI NHSHSPENCY DIDFCRSKLN SFGYQPQSLS 240 HSVSSSSLDV GVVPQANSMS EISYPMGQTV DSGLPLSGSG NQATQLCGID REARVLRYRE 300 KRKNRKFEKT VRYASRKAYA ETRPRIKGRF AKRTDMVSEV DEIYGSAASP VFLTDAQYGI 360 VPTF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453645.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 5 | ||||
Swissprot | Q9FHH8 | 1e-110 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A1S3BW82 | 0.0 | A0A1S3BW82_CUCME; zinc finger protein CONSTANS-LIKE 5 | ||||
STRING | XP_008453645.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-108 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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