PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017500P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 376aa    MW: 41101.2 Da    PI: 6.3661
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017500P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.32e-052161438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    + C+ ++  ++  +C+ ++ +lC  C  ++H        H+
  MELO3C017500P1 21 KPCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCAnklasrHE 61
                    57******99********************95545666665 PP
2zf-B_box27.94.9e-0963108342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  MELO3C017500P1  63 VWMCEVCEQAPAVVMCKADAAALCVTCDADIHSAnplarrHERVPV 108
                     689*****************************66899999999986 PP
3CCT70.25.2e-24302345144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  MELO3C017500P1 302 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 345
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-91865IPR000315B-box-type zinc finger
CDDcd000211.43E-72265No hitNo description
PROSITE profilePS501199.7412365IPR000315B-box-type zinc finger
PROSITE profilePS5011910.93661108IPR000315B-box-type zinc finger
PfamPF006434.5E-763108IPR000315B-box-type zinc finger
CDDcd000219.16E-964108No hitNo description
SMARTSM003368.5E-1166108IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787302344IPR010402CCT domain
PfamPF062035.8E-18302344IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGIDGDSVVK GFGGGWGVVA KPCDSCKTGP AAVYCRPDSA FLCLPCDAKI HCANKLASRH  60
ERVWMCEVCE QAPAVVMCKA DAAALCVTCD ADIHSANPLA RRHERVPVEP FFDSTESVVK  120
SSSVFNFLVP NETNAPVCDG AHHHEEVEVS SWLLSNSFFN SKLVDGPEIK PPSGDHLFFN  180
EMDSFIDFEY PNPVNNHSAI NDSVVPVQTK PLPTPVTNHT HSPENCYDID FCRSKLNSFG  240
YQPQSLSHSV SSSSLEVGVV PEGNSMSEIS YPMGQNVSTG ADSGLRLSGP GNQATQLCGM  300
DREARVLRYR EKRKNRKFEK TIRYASRKAY AETRPRIKGR FAKRTDMLSE VDEIYGSAAS  360
SVFLTDAQYG VVPTF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453644.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH81e-122COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A1S3BXX90.0A0A1S3BXX9_CUCME; zinc finger protein CONSTANS-LIKE 5-like
STRINGXP_008453644.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-105CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]