PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017472P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARR-B
Protein Properties Length: 413aa    MW: 46947.2 Da    PI: 6.9544
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017472P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.83.8e-21204256154
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     +pr++Wt+eLH++Fvea e+L G+++ +P +il+ m+ + Lt+e+v+SHLQk+R
  MELO3C017472P1 204 RPRVNWTKELHAKFVEAYEKL-GEKERVPNNILKYMNDPRLTRENVASHLQKHR 256
                     59*******************.99999**************************9 PP
2Response_reg585.4e-20251331109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl +d + + ++ l  +l+k +y +v +++++eea++ll++++  +D++++ +   +mdG+++l+ i   ++++p+++++a+++ +++++ l  G
  MELO3C017472P1  25 VLAIDANIVCLRYLVHLLQKCQY-KVSATTTAEEAIRLLNDEKqtFDIVITNVVRHDMDGFKILQVIGV-GMDIPVVMISANDDLKMMKRGLMEG 117
                     677888889999***********.***************665556**********************65.457********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a+ +lsKp+  ++l +
  MELO3C017472P1 118 ADLYLSKPVGLQDLKN 133
                     ***********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.8E-2822155No hitNo description
SuperFamilySSF521723.13E-2623163IPR011006CheY-like superfamily
SMARTSM004482.3E-1723135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.05424139IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.4E-1625133IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.57E-2026139No hitNo description
PROSITE profilePS5129411.412201260IPR017930Myb domain
SuperFamilySSF466891.43E-15202261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-22202261IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-18205257IPR006447Myb domain, plants
PfamPF002492.3E-8206256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEAFDNRIIP LEAEEDDQFP IGLKVLAIDA NIVCLRYLVH LLQKCQYKVS ATTTAEEAIR  60
LLNDEKQTFD IVITNVVRHD MDGFKILQVI GVGMDIPVVM ISANDDLKMM KRGLMEGADL  120
YLSKPVGLQD LKNIWQLALR KRSSRKRSNP NLSLSEQPAV EEHRYPIERV TMNQDYVGDH  180
IINKLDDDND NNNLVDSSSC SKKRPRVNWT KELHAKFVEA YEKLGEKERV PNNILKYMND  240
PRLTRENVAS HLQKHRDTLR KKKASGVGKL GIQRNLYDKN PTKASTLYNS MNHMNKVSNL  300
GPQFLISNGQ GSQTWTTAGS CYPVPEFKQF NFPSYTSTSK PFDDDDHNQY FLGGFDEPIN  360
NSSYYPSLKT NCDFNSTSQI FVGHYAIENH TDDGAGTLHM VPMSLFNQLV VY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-15201261262ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453705.10.0PREDICTED: two-component response regulator ARR10-like
TrEMBLA0A1S3BWW60.0A0A1S3BWW6_CUCME; two-component response regulator ARR10-like
STRINGXP_008453705.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1955035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-52response regulator 12