PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017429P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-PHD
Protein Properties Length: 715aa    MW: 80947.9 Da    PI: 8.8389
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017429P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.92.6e-11505550954
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ++ +e L e+F+ n  ps++ +e L+k+lgL+ ++V+ WF+N R+ 
  MELO3C017429P1 505 RHAVEKLREVFAANELPSRDIKENLSKELGLDAEKVSKWFKNARYS 550
                     67899***************************************85 PP

2PHD35.62e-12238293151
                     SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C+   +  +++++lCd +C+ +fH+kCl+++l+++++p g   w+C+ C++k
  MELO3C017429P1 238 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDTKSIPPGdqGWFCKFCECK 293
                     699999854455********56********************9999*******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.62E-13229296IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.6E-11234293IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.247236293IPR019787Zinc finger, PHD-finger
SMARTSM002491.1E-7238291IPR001965Zinc finger, PHD-type
PfamPF006281.5E-9238293IPR019787Zinc finger, PHD-finger
CDDcd155045.77E-31238290No hitNo description
PROSITE patternPS013590239290IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007111.985494554IPR001356Homeobox domain
SMARTSM003891.2E-8496558IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-11497548IPR009057Homeodomain-like
SuperFamilySSF466894.02E-10498561IPR009057Homeodomain-like
CDDcd000864.93E-8502555No hitNo description
PfamPF000468.5E-9505550IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MRGAGKRLIE ESEKCSHSKL ETGSELIFPL KLTRCSKISH SKQKKSRTKS HSQAICSTFK  60
RRSLPKSLSK GNKNVTIRQL AGKTFLLKKL DTKPSKELLL SKLQGGKSLP STNTKGNPEK  120
VEPVVKINQQ RKRKKNKGKK EKVELDEASR LQRRTRYLII KMKLEQNLID AYSGEGWKGQ  180
SREKIRPEKE LQRAKKQILK CKLGIRDAIR QLDLLGSVGC IEDSVIGPDG SVYHEHIFCA  240
KCKLREAFPD NDIILCDGTC NCAFHQKCLD PPLDTKSIPP GDQGWFCKFC ECKMEILEGM  300
NAHLGTRFPL NIGWEDVFKE EAAFPDGGNA LLNHEEDWPS DDSEDDDYDP DKKENGHDNG  360
SEEENDKDVL EESSSSTSLS WSLDGEDLIP GDGIGCEDHF GAGTGIVSDG SNEEGITCGR  420
RQRQAVDYKK LYDEMFGKDA PAHEQEVSED EDWGPAKRRR REKECDAAST LMSLCESEKK  480
SQDIDMEAEK KLLNSHGRSF FRIPRHAVEK LREVFAANEL PSRDIKENLS KELGLDAEKV  540
SKWFKNARYS ALRTRKAEGA TQPHSSYTTS NEPRLADSKE MSENLHSLED APIKELQLKL  600
RGSHSKKKQH RKSSHVSSNH NKDAFDFGDD ISLKNLLKKR KTKVKKRVNF VARGEGQETE  660
LEMERLCKIK GRLETMKQKL LRLTKRKDDG ILDRSHMIEQ SIVYVPVAVL KEKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349KKSRTKS
2130134RKRKK
3457462RRRREK
4632640LKNLLKKRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453562.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_008453563.10.0PREDICTED: pathogenesis-related homeodomain protein
SwissprotP487851e-165PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A1S3BWM70.0A0A1S3BWM7_CUCME; pathogenesis-related homeodomain protein
STRINGXP_008453562.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-162pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]