PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C017429P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | HB-PHD | ||||||||
Protein Properties | Length: 715aa MW: 80947.9 Da PI: 8.8389 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 34.9 | 2.6e-11 | 505 | 550 | 9 | 54 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++ +e L e+F+ n ps++ +e L+k+lgL+ ++V+ WF+N R+ MELO3C017429P1 505 RHAVEKLREVFAANELPSRDIKENLSKELGLDAEKVSKWFKNARYS 550 67899***************************************85 PP | |||||||
2 | PHD | 35.6 | 2e-12 | 238 | 293 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+ +fH+kCl+++l+++++p g w+C+ C++k MELO3C017429P1 238 FCAKCKLreAFPDNDIILCDgTCNCAFHQKCLDPPLDTKSIPPGdqGWFCKFCECK 293 699999854455********56********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.62E-13 | 229 | 296 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 4.6E-11 | 234 | 293 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.247 | 236 | 293 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.1E-7 | 238 | 291 | IPR001965 | Zinc finger, PHD-type |
Pfam | PF00628 | 1.5E-9 | 238 | 293 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15504 | 5.77E-31 | 238 | 290 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 239 | 290 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50071 | 11.985 | 494 | 554 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-8 | 496 | 558 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-11 | 497 | 548 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.02E-10 | 498 | 561 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.93E-8 | 502 | 555 | No hit | No description |
Pfam | PF00046 | 8.5E-9 | 505 | 550 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MRGAGKRLIE ESEKCSHSKL ETGSELIFPL KLTRCSKISH SKQKKSRTKS HSQAICSTFK 60 RRSLPKSLSK GNKNVTIRQL AGKTFLLKKL DTKPSKELLL SKLQGGKSLP STNTKGNPEK 120 VEPVVKINQQ RKRKKNKGKK EKVELDEASR LQRRTRYLII KMKLEQNLID AYSGEGWKGQ 180 SREKIRPEKE LQRAKKQILK CKLGIRDAIR QLDLLGSVGC IEDSVIGPDG SVYHEHIFCA 240 KCKLREAFPD NDIILCDGTC NCAFHQKCLD PPLDTKSIPP GDQGWFCKFC ECKMEILEGM 300 NAHLGTRFPL NIGWEDVFKE EAAFPDGGNA LLNHEEDWPS DDSEDDDYDP DKKENGHDNG 360 SEEENDKDVL EESSSSTSLS WSLDGEDLIP GDGIGCEDHF GAGTGIVSDG SNEEGITCGR 420 RQRQAVDYKK LYDEMFGKDA PAHEQEVSED EDWGPAKRRR REKECDAAST LMSLCESEKK 480 SQDIDMEAEK KLLNSHGRSF FRIPRHAVEK LREVFAANEL PSRDIKENLS KELGLDAEKV 540 SKWFKNARYS ALRTRKAEGA TQPHSSYTTS NEPRLADSKE MSENLHSLED APIKELQLKL 600 RGSHSKKKQH RKSSHVSSNH NKDAFDFGDD ISLKNLLKKR KTKVKKRVNF VARGEGQETE 660 LEMERLCKIK GRLETMKQKL LRLTKRKDDG ILDRSHMIEQ SIVYVPVAVL KEKV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 43 | 49 | KKSRTKS |
2 | 130 | 134 | RKRKK |
3 | 457 | 462 | RRRREK |
4 | 632 | 640 | LKNLLKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453562.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein | ||||
Refseq | XP_008453563.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein | ||||
Swissprot | P48785 | 1e-165 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A1S3BWM7 | 0.0 | A0A1S3BWM7_CUCME; pathogenesis-related homeodomain protein | ||||
STRING | XP_008453562.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-162 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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