PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017424P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 279aa    MW: 31712.2 Da    PI: 5.7553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017424P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-135092754
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N++++ Lr+++P+      +K++Ka+i + A++YI++L
  MELO3C017424P1 50 VSERNRRRKLNERLFALRSVVPNI-----TKMDKASIIKDAIDYIHDL 92
                    57*********************7.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-1841107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.6984392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-134697No hitNo description
SMARTSM003531.6E-154998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1649108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-115092IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDSIGDDYLN SLGTDIFIGE ELDSWALEEP LSAYYDSSSP DGSAASKNIV SERNRRRKLN  60
ERLFALRSVV PNITKMDKAS IIKDAIDYIH DLHDQERRIQ AEIYELESGT LKKITGYEFD  120
QDQLPLLLRS KRKKTEQYLS YDSPVSRISP IEVLDLSVTY MGDRTIVVSM TCCKRADSMV  180
KLCEVFESLK LKIITANITT VSGRLLKTVF IEAEQEERDY LKIKIETAIA GLNDPHSPMS  240
IESTNGRHTR KERSDGWKLV LSLIRFFHFA LSWGCNVT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-132LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-132LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453552.10.0PREDICTED: transcription factor bHLH35
SwissprotQ2HIV96e-80BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3BWL70.0A0A1S3BWL7_CUCME; transcription factor bHLH35
STRINGXP_008453552.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-73bHLH family protein