PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C017308P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 345aa MW: 39378.7 Da PI: 7.4151 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.4 | 6.9e-54 | 5 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++k+++++++ ++i vd++k ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++ MELO3C017308P1 5 LPPGFRFHPTDEELISYYLTQKLSDSSFTS-KAIGVVDLNKNEPWDLPAKATMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFGV 98 79*************************999.88***************999999***************************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfykgrap+gek++Wvmheyr MELO3C017308P1 99 GHALVGMKKTLVFYKGRAPRGEKSNWVMHEYRQ 131 *******************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-60 | 3 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.396 | 5 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-28 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MEENLPPGFR FHPTDEELIS YYLTQKLSDS SFTSKAIGVV DLNKNEPWDL PAKATMGEKE 60 WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFGVGH ALVGMKKTLV FYKGRAPRGE 120 KSNWVMHEYR QQSSHFFKPS KEEWVVCRVF QKQNTPKKPQ QSSSSQPSLS SPCDTNSIVN 180 EFGDHIELSN FTNSNITSSQ TYENNNMINN NNNMMNMNMN LNLNNWVSPT NETLIPSLSW 240 PLNSNLLTSS NNLSMNSLLL KALQLRTFQQ QRDNVLASSS SNTFNNNIHD HHHHQAANIV 300 HSQFGTTNDH LSCFQPSSSS KVFEPSSQQQ QQQEEQPLNL DSLW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-54 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-54 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-54 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-54 | 4 | 158 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-54 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-54 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-54 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-54 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-54 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-54 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-54 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-54 | 4 | 158 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-54 | 4 | 158 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-54 | 4 | 158 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453395.1 | 0.0 | PREDICTED: NAC domain-containing protein 92 | ||||
Swissprot | Q9FLJ2 | 7e-79 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1S3BWY4 | 0.0 | A0A1S3BWY4_CUCME; NAC domain-containing protein 92 | ||||
STRING | XP_008453395.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4946 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18400.1 | 7e-92 | NAC domain containing protein 58 |
Publications ? help Back to Top | |||
---|---|---|---|
|