PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017304P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CO-like
Protein Properties Length: 355aa    MW: 41067.5 Da    PI: 5.1595
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017304P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box262e-08749339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +r+C+ +  k++++fC  ++ +lC++C ++ H+       H++
  MELO3C017304P1  7 ARVCDSCLCKRARWFCAADDAFLCQSCDVSVHSAnqlarrHDR 49
                    689*****************************65677777776 PP
2CCT68.22.2e-23308351144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++
  MELO3C017304P1 308 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRMKGRFVKRT 351
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.8E-9552IPR000315B-box-type zinc finger
PROSITE profilePS5011910.993552IPR000315B-box-type zinc finger
PfamPF006434.9E-8750IPR000315B-box-type zinc finger
CDDcd000212.29E-8840No hitNo description
PfamPF062036.0E-18308350IPR010402CCT domain
PROSITE profilePS5101716.043308350IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTGGRTARVC DSCLCKRARW FCAADDAFLC QSCDVSVHSA NQLARRHDRI RLETSSFNST  60
TDHLPPTPWL KGFTRKARTP RSNNNKISSS KASVFSIVPE IGNDNELGFS IDENDDEHHQ  120
FLGHQQEVPV FDPLFDDQKL LLTHELEDFG DGFLPSEVDL AEFVADVENL LGKEEEEEQQ  180
QQHDGNTIIV KVKDEELVQD CINKNNNHNG FWMDWDFKEE IEEEEEDEEE LKIKNKKNII  240
SLRLNYDAVI TAWDAQSSPY TTGNRPQFDL DDCLEEWSGI CSKGGRNVAV DDQEWRRNYN  300
GIISNGEREA RVSRYREKRR TRLFSKKIRY QVRKLNAEKR PRMKGRFVKR TTTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318334RRTRLFSKKIRYQVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453390.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1S3BWX50.0A0A1S3BWX5_CUCME; zinc finger protein CONSTANS-LIKE 16
STRINGXP_008453390.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.12e-63B-box type zinc finger protein with CCT domain