PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017286P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 342aa    MW: 38829.2 Da    PI: 9.5034
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017286P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.67.7e-37992513130
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnss 86 
                      k+drhski T  g+RdRR+Rls+++a++fF Lqd+LG+dk+skt+eWLl qa +aik+l ++           + s++ ++++++ +       
  MELO3C017286P1  99 SKRDRHSKINTLHGPRDRRMRLSLPVAKEFFGLQDMLGVDKASKTVEWLLFQARHAIKKLSKDqqsfhidgngdTRSPS-SVSDGEVV------- 185
                     69*************************************************************7766666666422222.22222222....... PP

             TCP  87 sg.......................kaaksaakskksqksaasalnlakesrakarararertrekm 130
                      +                       ++a+++++++++  ++ +++ + +e r+kararar r rek+
  MELO3C017286P1 186 -SgiidetptvvnnndinrkeleigRKATTKKEKRSRVGRKMAFHPFTRECREKARARARARAREKQ 251
                     .0222222334444445566777878888888888888888889*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-4199251IPR005333Transcription factor, TCP
PROSITE profilePS5136930.997100158IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.713233250IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MFVFNSCSNN NHGNDYSISF PDHSFLHFPS PFDDDGNPTN SLLLQQQSQH DIFLHHHIPL  60
NEPSPPPPST FVNALRSSET INNDVFHQDL ISQKKRSSSK RDRHSKINTL HGPRDRRMRL  120
SLPVAKEFFG LQDMLGVDKA SKTVEWLLFQ ARHAIKKLSK DQQSFHIDGN GDTRSPSSVS  180
DGEVVSGIID ETPTVVNNND INRKELEIGR KATTKKEKRS RVGRKMAFHP FTRECREKAR  240
ARARARAREK QLQIEGTSTT TKLQDVSKIS LWMSSTQMEN NGNDEQLRTR NEGKIIIDHE  300
TTDDCLMIMG RWSPSNSIYC NSLNNNNNGS PQEVNSKHQQ T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453366.10.0PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A1S3BWV50.0A0A1S3BWV5_CUCME; transcription factor DICHOTOMA-like
STRINGXP_008453366.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-18TCP family protein