PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017202P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 362aa    MW: 41043.8 Da    PI: 7.8272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017202P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.8e-14177223455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +hn+ ErrRRdriN+++  L++l+P+       K + a+ L  +++Y+k+Lq
  MELO3C017202P1 177 NHNQYERRRRDRINQKMKDLQKLVPNG-----SKTDRASLLDDTIQYLKQLQ 223
                     7*************************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.444173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-18176242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-13177227No hitNo description
Gene3DG3DSA:4.10.280.109.6E-17177231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11177223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-16179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSQWIVPNLN HHHHHQTHQS QQQEDANKSS SHVHNFSHKN STLFSHNLIP TPKYEGMERT  60
WESGDQQEAA MEGHGHCHGE VLPQMPSTKH SWSESEDTLE SIVHSSLSRK RTRSNPEYWK  120
DETLMTEASL ESHRTFKSKN SIQDLAVEHD GSEEEYNMKG KMGGSCSNRQ TRTAAINHNQ  180
YERRRRDRIN QKMKDLQKLV PNGSKTDRAS LLDDTIQYLK QLQAQVQFMG SIRSASQMVM  240
PLGIQQQQQQ LQMSLLAART GLLDAASVAS SSSSFPWAAT FPQILLPSIV STTKPKSKFS  300
TGAFVPPTDP FCTFLAQSMD MDFYSKMVTL YCQEVNRTPQ QTNKLMQSQR IGGDKEDMHH  360
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453232.10.0PREDICTED: transcription factor UNE10
TrEMBLA0A1S3BWW40.0A0A1S3BWW4_CUCME; transcription factor UNE10
STRINGXP_008453232.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2479622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.23e-19phytochrome-interacting factor7