PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C017178P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Dof | ||||||||
Protein Properties | Length: 470aa MW: 51424.4 Da PI: 5.5554 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126 | 1.1e-39 | 119 | 179 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s MELO3C017178P1 119 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTEGGTMRNVPVGAGRRKNKNSA 179 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-31 | 115 | 176 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.9E-32 | 121 | 177 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.733 | 123 | 177 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 125 | 161 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MLEIKDPPIK IFGKEIQLPP DCELSFIESD DDDDHSDSFS DKQPGDGALP KDVGKASESS 60 AAKEETLHDS EDSACVQTAN EAHMNPEVVS MDENDKLETG KPEKEQNDAP NSKEKLKKPD 120 KILPCPRCNS METKFCYYNN YNVNQPRHFC KACQRYWTEG GTMRNVPVGA GRRKNKNSAS 180 HYRQITISEA LQAAQIDVPN GVNCLATKSN GRVLNFSVNA PVCESMSTVL NPTGRKVLNG 240 TRNEFYRPDD QGIKAPCKGG ETGDECSSAS SVTMSSSMEE GARRCPQEPQ MQNINGFPPQ 300 IPYLPSVPWP CSWNAPVPPP TFCPPGVPLP FYPATYWSCG VPGAWNIPWF PPQPCSQNSG 360 ANSPTLGKHS RDGGDKLQAD NSEKEEPPKQ KNGSVLIPKT LRIDDPNEAA KSSIWETLGI 420 KNDSIKAVDL SKVFQSKGEQ KNSVSEVLSP VLQANPAALS RSRTFHERS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453209.1 | 0.0 | PREDICTED: cyclic dof factor 3 | ||||
TrEMBL | A0A1S3BWG5 | 0.0 | A0A1S3BWG5_CUCME; cyclic dof factor 3 | ||||
STRING | XP_008453209.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-102 | cycling DOF factor 3 |