PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017157P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 586aa    MW: 63692.5 Da    PI: 6.8196
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017157P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.8e-30277336159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+rs +d +++++tYeg+Hnh+
  MELO3C017157P1 277 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGApTCPVRKQVQRSVDDISILITTYEGTHNHP 336
                     58**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-30263338IPR003657WRKY domain
SuperFamilySSF1182901.1E-26270338IPR003657WRKY domain
PROSITE profilePS5081128.357272338IPR003657WRKY domain
SMARTSM007741.4E-35277337IPR003657WRKY domain
PfamPF031062.1E-26278336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MEAQQALATI DDDRVQSTGE GNDEASPNSK QRIHLKVVTS MGDLEKPFME TLSVPSASNS  60
TWKEEDDEQH HQHHEERMKR TKVEMREVKE ENERLKKYLD EIMKDYETLK RKFHEIKYNH  120
DHDQIREDHQ GKRSTQTSGS TINNINNNDD DDHHHQVEAE VDDMVSLTLG SSRFSTHHQN  180
KNTSSSSSSF SLTNKILDLK QDYVIQTPSI IDHNIHSPTH SEPKDQEEAG QTTWPPSKMS  240
KPGGLPSPAI GEDEVSPQNP PKKARVCVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY  300
YRCTGAPTCP VRKQVQRSVD DISILITTYE GTHNHPLPVS AMAMASTTSA AASMLLSGPS  360
SSSSTSSQPG LNHSCTAAAT AVNLHGMNMY LSNNTSSKQF YLPNSSMLSS SLNHPTITLD  420
LTSNPPSTSS SSPFHKIPLV NNNNNYNNYP LQNIPSQILI LPLHNPISYF ANKQLPLHTN  480
IYQAYLQQIS KSSMTPPQPA LPSDTIAAAT KAITSDPSFQ SALAAALSSI IGGGETGPSV  540
SSLVVGGGGG GQGSMGFEAA AKSLTCSTSK STPSSSPGDS RDNGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21264338174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453182.10.0PREDICTED: probable WRKY transcription factor 61 isoform X1
TrEMBLA0A1S3BWD60.0A0A1S3BWD6_CUCME; probable WRKY transcription factor 61 isoform X1
STRINGXP_008453182.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-52WRKY DNA-binding protein 72