PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C017127P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | E2F/DP | ||||||||
Protein Properties | Length: 374aa MW: 42317.8 Da PI: 9.8213 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 74.4 | 1.2e-23 | 19 | 84 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ + + + ++l+++a++L v +rRRiYDi+NVLe+++++ +k+kn++rw+g MELO3C017127P1 19 RKQKSLGLLCSNFLRLYDRDDIQLISLDNAASRL---GV--ERRRIYDIVNVLESVGILCRKAKNQYRWIG 84 79****************9999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 73.7 | 1.9e-23 | 149 | 229 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL lltq+f+kl+ +s++ ++l+e+ak L+ + ++ k+RR+YDi+NVL al+liek ++k++++w g MELO3C017127P1 149 RREKSLALLTQNFVKLFVCSSAHLISLDEAAKLLLGDgqnvsIMRSKVRRLYDIANVLAALHLIEKtqtdgTRKPAFKWLG 229 689**************************************9999*************************99*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.7E-26 | 15 | 85 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.53E-16 | 18 | 83 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 7.7E-27 | 19 | 84 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 6.5E-21 | 20 | 84 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 4.2E-21 | 147 | 230 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 9.1E-28 | 149 | 229 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 5.6E-18 | 151 | 229 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.67E-12 | 151 | 230 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MAANLHLPVP DSSSNAYSRK QKSLGLLCSN FLRLYDRDDI QLISLDNAAS RLGVERRRIY 60 DIVNVLESVG ILCRKAKNQY RWIGYSGIPK ALRQLKEEDS KGNSSAIDAN DRSSLIDDEE 120 ETCSDLTSVS HDSISVISKS STSVRCENRR EKSLALLTQN FVKLFVCSSA HLISLDEAAK 180 LLLGDGQNVS IMRSKVRRLY DIANVLAALH LIEKTQTDGT RKPAFKWLGW RSLVENCRAG 240 KLIRCDSNKR SFGSDITNNN LKRNRMPYSF DLNKSPNSQQ QRHVQLEGCG VEVTGDDLER 300 DLNSKSFKFG PFSPSVRVEA RASKIEAKQS RNNWVSLAST YRPQYQNQAL RELFSHYKEA 360 WNLWYSEKKK TNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 3e-32 | 18 | 223 | 3 | 232 | Transcription factor E2F8 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453138.1 | 0.0 | PREDICTED: E2F transcription factor-like E2FE isoform X2 | ||||
Swissprot | Q8LSZ4 | 1e-107 | E2FE_ARATH; E2F transcription factor-like E2FE | ||||
TrEMBL | A0A1S3BVI3 | 0.0 | A0A1S3BVI3_CUCME; E2F transcription factor-like E2FE isoform X2 | ||||
STRING | XP_008453137.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3668 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 2e-99 | DP-E2F-like 1 |
Publications ? help Back to Top | |||
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