PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017064P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 359aa    MW: 39294.6 Da    PI: 4.2338
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017064P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.2e-11188232448
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                     +k+ rr  +NR AA rsR+RKk++++ Le k+k Le+e ++L   
  MELO3C017064P1 188 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSKFLEGECRRLGRL 232
                     6999**********************************9888654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-4185249IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.76187244IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-12188247No hitNo description
PfamPF001702.3E-9189239IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10189245No hitNo description
CDDcd147046.86E-16190241No hitNo description
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEEDLQFSEY DDLSGQIDWN DFFDEFPEVE IPIVEDSASP DSISSWINHI ENALLNDDED  60
NGLGLSLPTP THDLCDSFLA DVLVDSHEEP SVIDVDSNAS DCGNDFTNSQ KEDVHKVSPA  120
APTDDCCVSF MADVLADAHG RSSGVDAVVD VLSNASDCGD DSNNSQKEKV DAANIDESVG  180
EDVGDAVSKK RRRQLRNRDA AVRSRERKKM YVKDLEMKSK FLEGECRRLG RLLQCYCAEN  240
QALRFSLQMG GASGVSLTKQ ESAVLLLESL LLGSLLWLMG TVCLFTLPRL PQSTLEPVPQ  300
ERMENEGPGS APLNGRENNN SIRSYSSLQT RRCKAARTRM KPSMFDAILG ASSALIST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189208KRRRQLRNRDAAVRSRERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453026.10.0PREDICTED: bZIP transcription factor 60
TrEMBLA0A1S3BWD70.0A0A1S3BWD7_CUCME; bZIP transcription factor 60
STRINGXP_008453026.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120093032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.15e-16basic region/leucine zipper motif 60