PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016988P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 459aa    MW: 50891.5 Da    PI: 6.5894
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016988P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-074074402154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  MELO3C016988P3 407 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 440
                     469*****************************87 PP
2ELK22.42.9e-08361382122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+ +Y+++++++++E++
  MELO3C016988P3 361 ELKHELKAGYKEKIVDIREEIL 382
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.3E-20192236IPR005540KNOX1
PfamPF037907.6E-18194235IPR005540KNOX1
SMARTSM012562.0E-26249304IPR005541KNOX2
PfamPF037918.7E-20253303IPR005541KNOX2
PROSITE profilePS512139.289361381IPR005539ELK domain
SMARTSM011880.0026361382IPR005539ELK domain
PfamPF037894.3E-5361382IPR005539ELK domain
PROSITE profilePS5007111.855381444IPR001356Homeobox domain
SMARTSM003894.0E-11383448IPR001356Homeobox domain
SuperFamilySSF466895.56E-16383447IPR009057Homeodomain-like
CDDcd000865.32E-12384445No hitNo description
Gene3DG3DSA:1.10.10.607.6E-25388445IPR009057Homeodomain-like
PfamPF059201.3E-17401440IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAYHNHLSQD LPLHFSDHHH QNQPLSDSSS LRNILPDQLP AGHTSPDPKS QQPHHHHHHQ  60
HPLQTAPNWL NNALLRNQNP HSHFSTDTAT TAAAANTNFL NLHTTASDST VSHSSNQWLS  120
RPILHRNHSD VIDDVAAAAA GDAMIGAATA ALSHDSGDLK NDANSGDGLN KSEGMVMEPG  180
AGGEGVLNWQ HARYKAEILA HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSQNVVAK  240
YSALGHSAPP SMVGDDKEVD QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWDIEQSLQ  300
SLTGVSPGEG TGATMSDDDE DQVDSDANLF DGSLEGPDTM GFGPLIPTES ERSLMERVRQ  360
ELKHELKAGY KEKIVDIREE ILRKRRAGKL PGDTTSVLKQ WWQSHSKWPY PTEEDKARLV  420
QETGLQLKQI NNWFINQRKR NWHSNPSSST NLKSKRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-12384448872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1437457RKRNWHSNPSSSTNLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452886.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
RefseqXP_008452887.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A1S3BVQ40.0A0A1S3BVQ4_CUCME; homeobox protein knotted-1-like 3 isoform X1
STRINGXP_008452885.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-175KNOTTED1-like homeobox gene 3