PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C016988P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 470aa MW: 52028.6 Da PI: 6.5348 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.8 | 1.5e-07 | 407 | 440 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + MELO3C016988P2 407 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 440 469*****************************87 PP | |||||||
2 | ELK | 22.3 | 3e-08 | 361 | 382 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+ +Y+++++++++E++ MELO3C016988P2 361 ELKHELKAGYKEKIVDIREEIL 382 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.3E-20 | 192 | 236 | IPR005540 | KNOX1 |
Pfam | PF03790 | 7.8E-18 | 194 | 235 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.0E-26 | 249 | 304 | IPR005541 | KNOX2 |
Pfam | PF03791 | 9.0E-20 | 253 | 303 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.289 | 361 | 381 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.4E-5 | 361 | 382 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0026 | 361 | 382 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.855 | 381 | 444 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-11 | 383 | 448 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-16 | 383 | 447 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.56E-12 | 384 | 445 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-25 | 388 | 445 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.4E-17 | 401 | 440 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MAYHNHLSQD LPLHFSDHHH QNQPLSDSSS LRNILPDQLP AGHTSPDPKS QQPHHHHHHQ 60 HPLQTAPNWL NNALLRNQNP HSHFSTDTAT TAAAANTNFL NLHTTASDST VSHSSNQWLS 120 RPILHRNHSD VIDDVAAAAA GDAMIGAATA ALSHDSGDLK NDANSGDGLN KSEGMVMEPG 180 AGGEGVLNWQ HARYKAEILA HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSQNVVAK 240 YSALGHSAPP SMVGDDKEVD QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWDIEQSLQ 300 SLTGVSPGEG TGATMSDDDE DQVDSDANLF DGSLEGPDTM GFGPLIPTES ERSLMERVRQ 360 ELKHELKAGY KEKIVDIREE ILRKRRAGKL PGDTTSVLKQ WWQSHSKWPY PTEEDKARLV 420 QETGLQLKQI NNWFINQRKR NWHSNPSSST NLKSKRKSNA GENSSDRFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 5e-12 | 384 | 448 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452888.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X2 | ||||
Swissprot | O04136 | 0.0 | KNAP3_MALDO; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A1S3BUC9 | 0.0 | A0A1S3BUC9_CUCME; homeobox protein knotted-1-like 3 isoform X2 | ||||
STRING | XP_004157089.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-179 | KNOTTED1-like homeobox gene 3 |