PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C016975P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ARR-B | ||||||||
Protein Properties | Length: 690aa MW: 76278.5 Da PI: 6.5079 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91 | 1e-28 | 197 | 250 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl MELO3C016975P1 197 KPRVVWSVELHRKFVNAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 250 79*******************.********************************8 PP | |||||||
2 | Response_reg | 78.2 | 2.8e-26 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ + +l+++l++ +y +v+++ ++ al+ll+e++ +D+++ D+ mp+mdG++ll+ e++lp+i+++a+g+++++ + + G MELO3C016975P1 20 VLAVDDDPTCLLILETLLRRCQY-HVTTTNQAVMALKLLRENKnkFDVVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGITHG 112 799********************.***************888888*******************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + MELO3C016975P1 113 ACDYLLKPVRIEELKN 128 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 8.7E-166 | 1 | 689 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 6.4E-36 | 16 | 142 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.8E-42 | 17 | 156 | No hit | No description |
SMART | SM00448 | 2.5E-32 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.072 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.9E-23 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.02E-27 | 21 | 134 | No hit | No description |
PROSITE profile | PS51294 | 12.057 | 194 | 253 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.53E-20 | 194 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-30 | 195 | 255 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-26 | 197 | 250 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.2E-7 | 199 | 249 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MTVEPRLEDP VDQFPTGMRV LAVDDDPTCL LILETLLRRC QYHVTTTNQA VMALKLLREN 60 KNKFDVVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DPKLVMKGIT HGACDYLLKP 120 VRIEELKNIW QHVIRRKKFD PKDRMNSGNQ DRPDSENGEE SADLNGKFNK KRKDQNYNED 180 DDQDYGQDND DSSTQKKPRV VWSVELHRKF VNAVNQLGID KAVPKKILDL MNVEKLTREN 240 VASHLQKYRL YLKRISCVAN QQANMVTALS SADPSYLRIG SLGGIGNFHS LTGPPQFPNT 300 SYRSIPTTGM FGRLNTPACM GMHGLSSPGT VQLGNLSNSS NDQSTFHPIV LSGNRSGNIF 360 RGMPEPSELD QLQHVKHGTH VDNLSSAFDE RTVFPASIGL PNGNMSSSTL SNPLLGLTND 420 SSIPEVQHHE VNGGRKFGTQ SSIAVVSSNS DSSRPSLDNV RCTGDNWSNA VHSSRVHLNT 480 IPSGNLSNVA TSYHGQLRDN TTSALHIGNC LSDISSITSL STQSHESRID SQRQAATTSN 540 RFDQMISKVP VQDWNDHKED AYYHTTMACS SSNSLIPVNG AAETLSKRLE NPNAIFSGSK 600 DFNVTAQANV LDHAMVEHDR LKKSTMETSL MLKQGYLYDH QQKMQSRFSS SNCGSLEDIA 660 CAMMKQEQDD GKLLEGEFGC DNYPIGTCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-25 | 193 | 256 | 1 | 64 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452870.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
TrEMBL | A0A1S3BUB4 | 0.0 | A0A1S3BUB4_CUCME; Two-component response regulator | ||||
STRING | XP_008452870.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-135 | response regulator 12 |