PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C016850P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TALE | ||||||||
Protein Properties | Length: 367aa MW: 42224.3 Da PI: 6.3984 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 3e-09 | 293 | 328 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ MELO3C016850P1 293 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 328 4679*****************************885 PP | |||||||
2 | ELK | 37.9 | 3.8e-13 | 248 | 269 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s MELO3C016850P1 248 ELKNHLLRKYSGYLSSLKQELS 269 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.8E-21 | 104 | 148 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.4E-21 | 105 | 147 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.8E-28 | 155 | 206 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.2E-24 | 160 | 205 | IPR005541 | KNOX2 |
SMART | SM01188 | 1100 | 164 | 184 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.6E-10 | 248 | 269 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.296 | 248 | 268 | IPR005539 | ELK domain |
SMART | SM01188 | 3.5E-7 | 248 | 269 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.038 | 268 | 331 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.81E-20 | 269 | 344 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.6E-13 | 270 | 335 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 273 | 334 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.43E-11 | 280 | 332 | No hit | No description |
Pfam | PF05920 | 1.4E-16 | 288 | 327 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 306 | 329 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MEEYNNDVNE NSNGRGNFLY GSGNSSSSNF GRSTAEMNVN NFHLQQGADC FQTPHHQSIV 60 KTEATTSQHH HLLKFHYPLI RQPPPPPQPQ TTCRPEQNGV VDFEAIKAKI LAHPQYSSLL 120 EAYMECQKVG APPQVVERLV AARQEFEARQ RSSMVSGETI KDPELDQFME AYYDMLVKYR 180 EELSRPIQEA MDFMRRIESQ LTSLCNGPVR IFNSDEKCEG MGSSEEEQEN SGGETELPEI 240 DPRAEDRELK NHLLRKYSGY LSSLKQELSK KKKKGKLPKE ARQKLLNWWE LHYKWPYPSE 300 TEKVALAEST GLDQKQINNW FINQRKRHWK PSEDMQFMVM DGLHPPSAAL YIDGHYMTDG 360 HYRLGP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00675 | ChIP-seq | Transfer from GRMZM2G017087 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452690.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Swissprot | O04135 | 1e-175 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A1S3BUG3 | 0.0 | A0A1S3BUG3_CUCME; homeobox protein knotted-1-like 2 | ||||
STRING | XP_008452690.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4584 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-129 | KNOTTED-like from Arabidopsis thaliana |