PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C016779P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 421aa MW: 47984.1 Da PI: 6.5324 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.6e-05 | 161 | 184 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H MELO3C016779P1 161 YVCGVCGRKCKTNLDLKKHFKQlH 184 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 4.1E-6 | 81 | 151 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 10.679 | 161 | 189 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 163 | 184 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 4.07E-12 | 173 | 315 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 4.1E-6 | 246 | 311 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MNNTNFVSNP MLALPLLPSS SQLLFSNNAI DFNHRVSIVV KPTFQGSCRW RIRATAENGA 60 SSASTSQIDM VRNREGIFTA KQSKVVVLWD LDNKPPRGPP YEAAMALKRV AQRFGQVVDM 120 SAYANRHAFI HLPQWVVEER RERRQLDILE RKGLFTPSES YVCGVCGRKC KTNLDLKKHF 180 KQLHERERQK KLNRMRSLKG KKRQRYKERF VSGNHKYNEA ARSLITPKIG YGLASELRRA 240 GVFVKTVEDK PQAADWALKK QMQHSMSRGI DWMFLVSDDS DFSEMLRKAK EANLGTVVVG 300 DRDRALGRHA DLWVPWMGVE NGDVTEEDLV PRRWRMRRSD KEVDEGDDGF SVSSFYGDIE 360 AGSDLESVVE ELASASTEFN GLRISAFSEG EDEEEDDDWV EEDVAPDYLL VMSDEEDGYF 420 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452587.1 | 0.0 | PREDICTED: uncharacterized protein LOC103493568 | ||||
TrEMBL | A0A1S3BU78 | 0.0 | A0A1S3BU78_CUCME; uncharacterized protein LOC103493568 | ||||
STRING | XP_008452587.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6441 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-164 | C2H2-like zinc finger protein |