PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016774P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 390aa    MW: 42246.6 Da    PI: 10.0978
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016774P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30318375359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYe++Hnh 
  MELO3C016774P2 318 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYENDHNHA 375
                     99************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.6E-18269314IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-32305375IPR003657WRKY domain
PROSITE profilePS5081129.585311377IPR003657WRKY domain
SuperFamilySSF1182903.53E-26314375IPR003657WRKY domain
SMARTSM007743.1E-36316376IPR003657WRKY domain
PfamPF031063.6E-26318374IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MLLLNNNMAV ELMVGFGDAT TSNNFTPKME ENAAVSAVQE AASAGIQSVQ NFLRLMSHTT  60
NQQHSQDDSS TSTTPNNGYE AVADSVVNKF KKVISLLDRN RTGHARFRRA PVLSTTTTTT  120
PPPPPPPKVK LQHQDPSSSS PISVPPIQVK KQESVSAFKV YCPTPSSVVR LPPLPHNNPH  180
QPSHPPNTFQ AQQNTSSVVL KNGSVDRKDA TTTINFAPSP PISAANSYIS SLTGDTESLQ  240
PSLSSGFQFT HMSQVSSAGK PPLSSSSLKR KCNSMEDSAM KCGSSSGRCH CSKKRKNRIK  300
RVIRVPAVSS KLADIPPDDY SWRKYGQKPI KGSPHPRGYY KCSSLRGCPA RKHVERALDD  360
PTMLIVTYEN DHNHAHSTET PAPLVLESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20304374271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840270.0GU984027.1 Cucumis sativus WRKY protein (WRKY33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452580.10.0PREDICTED: probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-109WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1S3BVC40.0A0A1S3BVC4_CUCME; probable WRKY transcription factor 7 isoform X2
STRINGXP_008452579.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-79WRKY DNA-binding protein 7