PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016765P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 328aa    MW: 37605 Da    PI: 7.7836
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016765P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.2e-36251172103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll++
  MELO3C016765P1  25 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLLCE 110
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  MELO3C016765P1 111 IHRRKTA 117
                     ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.5E-3818109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.35E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MALMLDSCDG VLLSLDSHKA IPAPFLTKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF RKGEKHLLCE IHRRKTAQPQ  120
VTVNQHHQSL SPLNPGFYHF PTARLSISPS DSDDQNNYWC DSPSPNNNNN NNSVTALSED  180
NERLRRSNNM LMSELAHMKK LYNDIIYFVQ NHVKPVAPSN SYQYSTSTSL LSDGFPVVRQ  240
PNHYHHHHQV SSQIRNNTTV GTKSFVTILE EEQQQQQPKT KLFGVAIQSK KRLHPEYGNS  300
HSNNNNKARL VLEKDDLGLN LMPPSAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-222111717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452568.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-113HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1S3BUY50.0A0A1S3BUY5_CUCME; heat stress transcription factor B-4
STRINGXP_008452568.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-106heat shock transcription factor B4