PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C016678P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | STAT | ||||||||
Protein Properties | Length: 624aa MW: 69602.1 Da PI: 6.1083 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 198.6 | 5.7e-62 | 167 | 287 | 1 | 121 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 ldv+ll++ gqpv k++evvasL+yadsg++veks+d+eapLL+sydGvef+s+drp+kll+GrasfklkisqLsskcdn+Lfri+f+ip+++ y MELO3C016678P1 167 LDVMLLDSSGQPVLKELEVVASLIYADSGEAVEKSGDEEAPLLASYDGVEFASSDRPSKLLHGRASFKLKISQLSSKCDNKLFRIRFCIPSVEGY 261 8********************************************************************************************** PP STAT 96 pfleavskpirCisrsrntrsssltk 121 pf+ea+s+pirCisrsrntr+s+l+ MELO3C016678P1 262 PFFEALSSPIRCISRSRNTRMSTLML 287 ********************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 2.81E-5 | 40 | 112 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene3D | G3DSA:3.30.505.10 | 8.5E-6 | 549 | 614 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 8.46E-8 | 553 | 614 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.315 | 556 | 623 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MTPFLILSEW NRLKIMPLTT LHKADEGSSP GSSSSASVVP HEYLDVDFPM EKWVHIGCEV 60 STDFVRLHID GKMVGEKPVS SSLSEDTFPR GLGRIVLGNN GEDISLQGYV HNEKVLPSAS 120 LIRDHYAEDL PVKLFIDNSS TMEIEEGGDG IWNIVGGKPS CRRNFSLDVM LLDSSGQPVL 180 KELEVVASLI YADSGEAVEK SGDEEAPLLA SYDGVEFASS DRPSKLLHGR ASFKLKISQL 240 SSKCDNKLFR IRFCIPSVEG YPFFEALSSP IRCISRSRNT RMSTLMLKRS TFHSLDVSRS 300 SGLDNGTSEH EHVSVEEEKP SPLLKRVKSG QDRPTHNDDP SSGQPDEECN SHSFTANGAG 360 NGFGSRTERS KNNGSTGASP SDSGSTEARH SAPNRTRTNG NPISDVNIFK YCLAGLSERS 420 LLLKEIATSV SQEEILEFAE HVSLYSGCLH HRHQILMSRK LIEEGTRAWN SISQNKHHVH 480 WENVVFEIEE QFMRISGCSS RSLTQQDFEL LRRISGCQEY LTQESFERMW CWLYPVAFTL 540 SRQWINAMWS SLSPKWIEGF ITKEEAELSL QSPAGLQDPG TFILRFPTSR SWPHPDAGSL 600 VVTYVGNDYA LHHRLLTLDR IFR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 0.0 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452431.1 | 0.0 | PREDICTED: uncharacterized protein LOC103493465 isoform X2 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | A0A1S3BTU9 | 0.0 | A0A1S3BTU9_CUCME; uncharacterized protein LOC103493465 isoform X2 | ||||
STRING | XP_008452431.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6710 | 30 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Publications ? help Back to Top | |||
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