PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C016347P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YC

Protein Properties

Length: 118aa MW: 12887.1 Da PI: 8.2204

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C016347P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	102.1	3.9e-32	18	98	19	98
NF-YC 19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 h+lPlarikki+k + e+vkmis eaP+++skacelfi elt rsw+ a ++k+r l+k d+a+a+ td+fdfl+ + + MELO3C016347P1 18 HSLPLARIKKIMKkSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFN 98 99********725799*******************************************************987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-30	15	83	IPR009072	Histone-fold
SuperFamily	SSF47113	1.12E-24	15	92	IPR009072	Histone-fold
Pfam	PF00808	3.1E-20	19	83	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MRQAGAYSGV MYWKTGPHSL PLARIKKIMK KSGEEVKMIS GEAPIVFSKA CELFIEELTK 60 RSWMIAMQSK KRMLHKEDVA SAILATDVFD FLIGLIFNET AATAGDVGES ENISVGC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	8e-30	18	96	16	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	0.0	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008452022.1	3e-82	PREDICTED: nuclear transcription factor Y subunit C-1-like
Swissprot	A6BLW4	1e-29	NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A1S3BSA0	7e-81	A0A1S3BSA0_CUCME; nuclear transcription factor Y subunit C-1-like
STRING	XP_008452022.1	1e-81	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10559	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	1e-31	nuclear factor Y, subunit C4

Publications ? help Back to Top
Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]