PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016272P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 657aa    MW: 73441.8 Da    PI: 7.7081
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016272P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.5e-24130230198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  MELO3C016272P2 130 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 220
                     99****************************9643..445569************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  MELO3C016272P2 221 NGELRVGVRR 230
                     999*****98 PP
2Auxin_resp109.14.8e-36256334182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha+st++ F v+Y+Pra  s+F+v+++k+++a+++k++vGmRfkm+fe+e+s+err+sGt+vgv d++p +WpnS+WrsL
  MELO3C016272P2 256 ASHAVSTQTRFVVYYKPRA--SQFIVSLSKYMEAMNNKFMVGMRFKMRFEGEESPERRFSGTIVGVDDMSP-HWPNSEWRSL 334
                     789***************8..9*************************************************.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-41115259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-42124245IPR015300DNA-binding pseudobarrel domain
CDDcd100174.17E-21128230No hitNo description
PfamPF023622.3E-22130230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.21130232IPR003340B3 DNA binding domain
SMARTSM010192.5E-23130232IPR003340B3 DNA binding domain
PfamPF065073.8E-33256334IPR010525Auxin response factor
PfamPF023091.5E-6578625IPR033389AUX/IAA domain
SuperFamilySSF542779.02E-9583656No hitNo description
PROSITE profilePS5174520.99589656IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MANRGGGSFL PSSSTSIQGW CGDELYTELW KVSAGPLVEI PRVNDKVLYF PQGHMEQLEA  60
STNQELNQKL PLFNLPPKIL CQVVDTRLLA EQDSDEVYAQ ITLMPEANQA LPSSFEPPLI  120
ECRKTKVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MTQQTPTQEL VAKDLHGYEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRR LARQQSSMPS  240
SVISSHSMHL GVLATASHAV STQTRFVVYY KPRASQFIVS LSKYMEAMNN KFMVGMRFKM  300
RFEGEESPER RFSGTIVGVD DMSPHWPNSE WRSLRVQWDE LASIQRPDRV SPWEIEPFAP  360
TSPSIPHPIS VKNKRPRPPL EIPDSDNSTV TTLRHPGSTS HDDRTQLSVS AAELKRYENH  420
ATWHYKQTDA GGSGNSVSRT AMEGSWLASS SGCVSQHRLQ DLTDDRKNSS VWSTVFPGPL  480
AAHSTCPTPR SSNPKSDQVH DLGEKGKKAE AAPSCRLFGI ELINHSKSSV LPERAADQPN  540
STQNSTPNEI TDAEQNSNLP KISKERKLGL LPLPPKEIQH KQNSSTSSRS RTKVQMQGMA  600
VGRAVDLTTL EGYGQLIDEL EKMFDIKGEL HPRNKWEIVF TDDEGDMMLM GDYPWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1671936513362Auxin response factor 1
4ldw_A1e-1671936513362Auxin response factor 1
4ldw_B1e-1671936513362Auxin response factor 1
4ldx_A1e-1671936513362Auxin response factor 1
4ldx_B1e-1671936513362Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373377KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234150.0KU323415.1 UNVERIFIED: Trichosanthes dioica clone TdARF_13 auxin response factor 9-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451925.10.0PREDICTED: auxin response factor 18-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1S3BSL30.0A0A1S3BSL3_CUCME; Auxin response factor
STRINGXP_008451925.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9