PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016272P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 554aa    MW: 61979.8 Da    PI: 8.9495
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016272P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.11.9e-2427127198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  MELO3C016272P1  27 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 117
                     99****************************9643..445569************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  MELO3C016272P1 118 NGELRVGVRR 127
                     999*****98 PP
2Auxin_resp109.43.8e-36153231182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     a+ha+st++ F v+Y+Pra  s+F+v+++k+++a+++k++vGmRfkm+fe+e+s+err+sGt+vgv d++p +WpnS+WrsL
  MELO3C016272P1 153 ASHAVSTQTRFVVYYKPRA--SQFIVSLSKYMEAMNNKFMVGMRFKMRFEGEESPERRFSGTIVGVDDMSP-HWPNSEWRSL 231
                     789***************8..9*************************************************.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-4112156IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-4221142IPR015300DNA-binding pseudobarrel domain
CDDcd100172.65E-2125127No hitNo description
SMARTSM010192.5E-2327129IPR003340B3 DNA binding domain
PfamPF023621.8E-2227127IPR003340B3 DNA binding domain
PROSITE profilePS5086312.2127129IPR003340B3 DNA binding domain
PfamPF065072.9E-33153231IPR010525Auxin response factor
PfamPF023092.5E-7475553IPR033389AUX/IAA domain
SuperFamilySSF542777.06E-9480553No hitNo description
PROSITE profilePS5174520.99486553IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MPEANQALPS SFEPPLIECR KTKVHSFCKV LTASDTSTHG GFSVLRKHAT ECLPPLDMTQ  60
QTPTQELVAK DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLVAGDS FVFLRGENGE  120
LRVGVRRLAR QQSSMPSSVI SSHSMHLGVL ATASHAVSTQ TRFVVYYKPR ASQFIVSLSK  180
YMEAMNNKFM VGMRFKMRFE GEESPERRFS GTIVGVDDMS PHWPNSEWRS LRVQWDELAS  240
IQRPDRVSPW EIEPFAPTSP SIPHPISVKN KRPRPPLEIP DSDNSTVTTL RHPGSTSHDD  300
RTQLSVSAAE LKRYENHATW HYKQTDAGGS GNSVSRTAME GSWLASSSGC VSQHRLQDLT  360
DDRKNSSVWS TVFPGPLAAH STCPTPRSSN PKSDQVHDLG EKGKKAEAAP SCRLFGIELI  420
NHSKSSVLPE RAADQPNSTQ NSTPNEITDA EQNSNLPKIS KERKLGLLPL PPKEIQHKQN  480
SSTSSRSRTK VQMQGMAVGR AVDLTTLEGY GQLIDELEKM FDIKGELHPR NKWEIVFTDD  540
EGDMMLMGDY PWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-127126298362Auxin response factor 1
4ldw_A1e-127126298362Auxin response factor 1
4ldw_B1e-127126298362Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270274KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234150.0KU323415.1 UNVERIFIED: Trichosanthes dioica clone TdARF_13 auxin response factor 9-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451925.10.0PREDICTED: auxin response factor 18-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A1S3BSL30.0A0A1S3BSL3_CUCME; Auxin response factor
STRINGXP_008451925.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9