PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016254P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 280aa    MW: 33225.6 Da    PI: 8.3309
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016254P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix61.22.5e-1914102186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++e+++ i++r ++e++l + +       +kk+lWe  s +mre+gf r++ qCk+kw+nl  ryk  +++ k+       +cp+f++++
  MELO3C016254P1  14 QWSEEETREFIRIRADLEKDLTAVStgeapaaKKKTLWEMASVRMREKGFWRTADQCKCKWKNLLSRYKGKETSHKEY----GWQCPFFEEIH 102
                     7********************97533445555**************************************99999984....558*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.876778IPR017877Myb-like domain
PfamPF138371.9E-1713103No hitNo description
CDDcd122033.58E-161485No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTSTAMAATL HQHQWSEEET REFIRIRADL EKDLTAVSTG EAPAAKKKTL WEMASVRMRE  60
KGFWRTADQC KCKWKNLLSR YKGKETSHKE YGWQCPFFEE IHAVFTERGK AMHRLLLEPE  120
ACSISTKKRG RERSLEEHSD LKELNEDETE EEVTLTQRNS QKRKAARKLP AKSLGATDSK  180
SSSSSISYEI QEMLKGFLQW QQRMEMEWRE IVERHYNNRR MLEQEWRESM EKLERERLMA  240
EQAWREREEQ RKEKQDIRAE GMNALLTTLL NKLNHENNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451911.10.0PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A1S3BSN50.0A0A1S3BSN5_CUCME; trihelix transcription factor GT-3b-like
STRINGXP_008451911.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.15e-23Trihelix family protein