PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C016234P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

FAR1

Protein Properties

Length: 614aa MW: 72166.5 Da PI: 8.6436

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C016234P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.7	1.7e-27	41	127	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk++ dg+w ++++ ++HnHel p MELO3C016234P1 41 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESESG---NSRRPSVKKTDCKASMHVKRRPDGRWIIHEFIKDHNHELLP 127 *************************************9998877...7788899*****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-25	41	127	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-11	186	242	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.371	429	465	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.6E-6	438	464	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-7	440	467	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence Send to blast
MQDTEGAIVS LPKKDILFEG DVDFEPHTGI EFESHEAAYT FYQEYAKSMG FTTSIKNSRR 60 SKKSKEFIDA KFACSRYGVT PESESGNSRR PSVKKTDCKA SMHVKRRPDG RWIIHEFIKD 120 HNHELLPALA YHFRIHRNVK LAEKNNIDIL HAVSRYLALD EGDAQILLEY FKRIQKENPY 180 FFYAIDLNEE QRLRNLFWVD AKTMGGKAPK VIITDQDKAL KLAIEEVFPN TRHCFALWHI 240 LEKIPETLAH VIKRHENFLA KFNKCIFKSW SDEQFDMRWW KMVTRFELQD DEWIQSLYDD 300 RRKWVPTYME DIFLAGMSTA QRSDSMNAFF DKYIHKKITL KEFLRQYGII LQNRYEEEVI 360 ADFDTLHKQP ALKSPSPWEK QMSTIYTHTI FKKFQVEVLG VVGCRMRKEI EDGTVTTFRV 420 QDCEKDEHFL VRWHKLNSEV SCFCRLFEYK GFLCRHALIV LQMLDFRSIP SQYILKRWTK 480 DAKSRQPVTE ETEFRQNRVQ RYNDLCKKAI ELSEEGSHSE ECYNIAIRTL VEALKNCVNI 540 NNSKSAPAES SVHAHGLREE EENQGSITTK ANKKKSTNRK RKVGFQLAFD KLLYLCSEQV 600 KHGSHVFLFA KDS*

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence Send to blast

MQDTEGAIVS LPKKDILFEG DVDFEPHTGI EFESHEAAYT FYQEYAKSMG FTTSIKNSRR  60
SKKSKEFIDA KFACSRYGVT PESESGNSRR PSVKKTDCKA SMHVKRRPDG RWIIHEFIKD  120
HNHELLPALA YHFRIHRNVK LAEKNNIDIL HAVSRYLALD EGDAQILLEY FKRIQKENPY  180
FFYAIDLNEE QRLRNLFWVD AKTMGGKAPK VIITDQDKAL KLAIEEVFPN TRHCFALWHI  240
LEKIPETLAH VIKRHENFLA KFNKCIFKSW SDEQFDMRWW KMVTRFELQD DEWIQSLYDD  300
RRKWVPTYME DIFLAGMSTA QRSDSMNAFF DKYIHKKITL KEFLRQYGII LQNRYEEEVI  360
ADFDTLHKQP ALKSPSPWEK QMSTIYTHTI FKKFQVEVLG VVGCRMRKEI EDGTVTTFRV  420
QDCEKDEHFL VRWHKLNSEV SCFCRLFEYK GFLCRHALIV LQMLDFRSIP SQYILKRWTK  480
DAKSRQPVTE ETEFRQNRVQ RYNDLCKKAI ELSEEGSHSE ECYNIAIRTL VEALKNCVNI  540
NNSKSAPAES SVHAHGLREE EENQGSITTK ANKKKSTNRK RKVGFQLAFD KLLYLCSEQV  600
KHGSHVFLFA KDS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	0.0	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022136412.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A438BXP3	0.0	A0A438BXP3_VITVI; Protein FAR-RED impared response 1
STRING	XP_009349572.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]