PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016115P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 298aa    MW: 32363.2 Da    PI: 5.0537
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016115P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.5e-07447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ +e  e++  C  ++  lC  C +++H        H++vpl
  MELO3C016115P1  4 QCNVCEMAEATVLCCADEAALCWACDEKIHAAnklaskHQRVPL 47
                    7******99*********************66899999999986 PP
2zf-B_box29.41.6e-095294137
        zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    s+++kC+ ++e    +fC +++ llC++C +++H        H
  MELO3C016115P1 52 SQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTAntyvtgH 94
                    689*******************************654455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.424147IPR000315B-box-type zinc finger
CDDcd000217.44E-8347No hitNo description
PfamPF006431.7E-5447IPR000315B-box-type zinc finger
SMARTSM003365.3E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501199.3855299IPR000315B-box-type zinc finger
SMARTSM003367.2E-165299IPR000315B-box-type zinc finger
PfamPF006432.3E-75395IPR000315B-box-type zinc finger
CDDcd000212.11E-75599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKIQCNVCEM AEATVLCCAD EAALCWACDE KIHAANKLAS KHQRVPLSGS SSQMPKCDIC  60
QEASGYIFCL EDRALLCRKC DVAIHTANTY VTGHQRFLLT GVKVALEPTD PVACSSMAKS  120
HSREKSTETK VRPPSEREFS MPSPTELSRS LSVLGGSEDF MENRTLLTGS GDSGSGGFSQ  180
WQMDELISLT GFNQNYGYMD NGSSKADSGK LGDSDSSPVL RAADIELDDD DECSGQVPEA  240
SWTVPQIPSP PTASGLYWPR SYHNSMDGAV FVPDICSSEK VQHCSRNGTF SKRRRQF*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451731.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM21e-98BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1S3BS880.0A0A1S3BS88_CUCME; B-box zinc finger protein 22
STRINGXP_008451731.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.14e-98light-regulated zinc finger protein 1