PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C016092P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 601aa MW: 65469.2 Da PI: 10.5495 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.3 | 2.2e-37 | 209 | 311 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...seceaesssssasnsssg..... 88 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++++ ++ ++++++++++s + ++++ MELO3C016092P1 209 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWHPstgNASTQGEEQQSLNDENENllsvq 303 79**************************************************************6655522223355555555554454455665 PP TCP 89 .......k 89 MELO3C016092P1 304 rdvfnsaG 311 55555541 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-31 | 209 | 321 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.295 | 211 | 269 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
MAELFGRGRR GGSSFISKSR SNRLQSGGSS SNCRKKKERE RREKKIEEAI RIRKKHCPFK 60 AGRRKAKQSE SGSSTKSPSS SSKPDSNFEA CRRKSRGRRP RFSTPPPPRP PPPPSSAPTA 120 SFQFLDSQSQ QPHQQQAPKK RSYFQLPPPH PVAAPAASAS TFADQSIEYA RKMGESHRQT 180 STSSRLGMRT GGGGGEIVEV QGGHIVRSTG RKDRHSKVCT AKGPRDRRVR LSAHTAIQFY 240 DVQDRLGYDR PSKAVDWLIK KAKAAIDELA ELPAWHPSTG NASTQGEEQQ SLNDENENLL 300 SVQRDVFNSA GNRRATVLGS DSRVSEFPLQ NLQHTQMGEG PNSSTSSFLP PSLDSDSIAD 360 TIKSFFPIGT AAAAAETTSS SIQFQNYPQD LLSRTSSQNQ DLRLSLQSFQ DPIAIHRHHH 420 AQHQSQGHQN EHVLFSGTAP LSGFDVTTAG WTEHNSLNPA EISRFPRITS WNASGAETGS 480 GGGGGIRSAG YVFNSPHLPT ALPPSQLMQP LFGENQFFSQ RGPLQSSNTP SIRAWIDPSL 540 TPTDHHQHQM PPSIHQSSYA GLGFASGGFS GFHIPTRIQG EEEHDGISDK PSSASSDSRH 600 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-19 | 216 | 269 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-19 | 216 | 269 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 0.0 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008451706.1 | 0.0 | PREDICTED: transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-102 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A1S3BSX4 | 0.0 | A0A1S3BSX4_CUCME; transcription factor TCP4 | ||||
STRING | XP_008451706.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 5e-68 | TCP family protein |