PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016081P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 326aa    MW: 37684.5 Da    PI: 10.0987
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016081P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18216270457
                     -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     + +f++ q++ Le+ F++ +++++ +++ eLA++lgL+ rq+ +WFqNrRa++++
  MELO3C016081P1 216 KIRFSDLQIKSLETIFYStESKLNSTQKVELATELGLQPRQIAIWFQNRRARWRR 270
                     5689*************98***********************************7 PP
2HD-ZIP_I/II80.23.2e-26215304287
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaL...kraydalkeenerLekeveeL 87 
                     +k r+s+ q+k+LE+ F ++e kL++++Kvela+eLglqprq+a+WFqnrRAR++  ++ ++ + L    +++++l+een++L ++v +L
  MELO3C016081P1 215 NKIRFSDLQIKSLETIFYSTEsKLNSTQKVELATELGLQPRQIAIWFQNRRARWRRCRTISKASELiiiIKQFKTLQEENNSLLSQVPKL 304
                     689**************88777********************************987776555544222689999999999999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003894.9E-14207275IPR001356Homeobox domain
SuperFamilySSF466892.22E-16209271IPR009057Homeodomain-like
PROSITE profilePS5007116.844210271IPR001356Homeobox domain
PfamPF000466.8E-16217270IPR001356Homeobox domain
CDDcd000863.23E-6218265No hitNo description
Gene3DG3DSA:1.10.10.602.1E-17221270IPR009057Homeodomain-like
PRINTSPR000313.8E-6242251IPR000047Helix-turn-helix motif
PROSITE patternPS000270246269IPR017970Homeobox, conserved site
PRINTSPR000313.8E-6251267IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MILVRSSIVV VVVVVVVVVV VVVVVVVVVV VGRGIDEKEE DDEKTRLEEA EGEKSMDLAE  60
SRLMKGMVRG EEEGETEEFI EWWEVRDLRW RWKMKEMERR ERRRIRAMKE RVVRSKVAGS  120
TNDNVAATKN IDFLGRRLWN QKQNPKSGGM GGRGGGEGCN TTTDTLRKCI GEYESQEEEQ  180
IIYSTNFTVP KFEAEAVAYT LHLRRKKRKS RNNMNKIRFS DLQIKSLETI FYSTESKLNS  240
TQKVELATEL GLQPRQIAIW FQNRRARWRR CRTISKASEL IIIIKQFKTL QEENNSLLSQ  300
VPKLFFIFLY SSFYSQAFSL VAIGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-18homeobox 7