PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C016045P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

HB-other

Protein Properties

Length: 316aa MW: 34809.1 Da PI: 6.1418

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C016045P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.6	1.5e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g++ +qV+ +F +R + +k MELO3C016045P1 69 KRPRDLLNPKAVKYMQTVFSIKDALSKKESREISALFGVKVTQVRDFFNSQRSRVRK 125 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.426	66	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.87E-6	68	128	IPR009057	Homeodomain-like
SMART	SM00389	8.7E-4	68	130	IPR001356	Homeobox domain
CDD	cd00086	1.07E-4	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.7E-6	69	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MEVLKDDFSN LEIGTSFDSF QKFLDSQKDL FRSQVDQLQS IVVTQCKLTG VNPLSQEMAA 60 GALSIAIGKR PRDLLNPKAV KYMQTVFSIK DALSKKESRE ISALFGVKVT QVRDFFNSQR 120 SRVRKLVRVS REKSIQSNSC KQLEVGGIVT NNDPSIPIDA VPLNTDAVVP LNADAPMPLN 180 SEAPVPLNFD TPVPLNTIEP SNVDNGPSCS TQDSELSGID GVDKHFVQTI FSMMQKEETF 240 SGQVKLMEWI LQIQNSSVLC WFLTKGGAII LATWLSQAAA EEQTSLLYVI LEVFCHLPLH 300 KALPVHISAI LQKKC*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	0.0	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008451616.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-107	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A1S3BRZ1	0.0	A0A1S3BRZ1_CUCME; homeobox protein LUMINIDEPENDENS
STRING	XP_008451616.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-100	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]