PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C015945P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 171aa MW: 18530.2 Da PI: 9.7195 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.3 | 1.2e-19 | 52 | 86 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C++t TplWR gp g+++LCnaCG++yrk+++ MELO3C015945P1 52 CVHCRATRTPLWRAGPAGPRSLCNACGIRYRKMKM 86 ********************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 7.6E-14 | 44 | 90 | No hit | No description |
SMART | SM00401 | 4.8E-11 | 46 | 110 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.571 | 46 | 82 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-15 | 50 | 87 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.84E-14 | 51 | 83 | No hit | No description |
Pfam | PF00320 | 6.6E-17 | 52 | 85 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 52 | 77 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MLKGEVIGDS LIMAFLMNRA ADHSPSTFNP SLMTAVSEQG LFELEAEKQR ACVHCRATRT 60 PLWRAGPAGP RSLCNACGIR YRKMKMNSNN DGEVNNNNNN NNNNNNKMGK GKKMGGGGSL 120 KLRVVRLGRE IMVHRRPTTA MEDNGVAESI GEEEQTAAML LMALSSGYVS * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681803 | 1e-167 | LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026. | |||
GenBank | LN713255 | 1e-167 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008451515.1 | 1e-123 | PREDICTED: GATA transcription factor 15-like | ||||
TrEMBL | A0A1S3BSR7 | 1e-122 | A0A1S3BSR7_CUCME; GATA transcription factor 15-like | ||||
STRING | XP_008451515.1 | 1e-122 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 4e-21 | GATA transcription factor 15 |